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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 621 fasta sequence
[AAAAACTTCGAGCTTCTTCTCGAATGGGTTTGTTTTTTTAAATCTGCCGGGGTTTGATGGGTTCACCACTGCAGGCACTGCAAGAGGGCCGACTGCACAAAAGTCCAGCGTCCAACGTGCGGCGCTGGTCACGTTGTAGGAAAACGAGAGCGAGCAGCAACATCGATACAGAGGTGCAACCCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTGGTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACCGACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGTGGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGAGCCCGCGGAGCATATCTGAAGTGGAGAGAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAAAGGAGGGACAACATCGCAAAGCTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCCCTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGCTGGTCTGGCTGGTGCGCTTGCAGGCCAGCACATCCAG]
[+] EMBL BU805034 [AAAAACTTCGAGCTTCTTCTCGAATGGGTTTGTTTTTTTAAATCTGCCGGGGTTTGATGGGTTCACCACTGCAGGCACTGCAAGAGGGCCGACTGCACAAAAGTCCAGCGTCCAACGTGCGGCGCTGGTCACGTTGTAGGAAAACGAGAGCGAGCAGCAACATCGATACAGAGGTGCAACCCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTGGTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACCGACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGTGGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGTGCCCGCGGAGCATATCTGAAGTGGAGAGAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAAAGGAGGGACAACATCGCAAAGCTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCCCTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGCTGGTCTGGCTGGTGCGCTTGCAGGCCAGCACATCCAG]
[+] EMBL FR0063849 [ GTCCAACGTGCGGCGCTGGTCACGTTGTAGGAAAACGAGAGCGAGCAGCAACATCGATACAGAGGTGCAACCCCCACAAAATGG CTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTGGTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACCGACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGTGGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGAGCCCGCGGAGCATATCTGAAGTGGAGAGAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAAGCCGCT ]
consensusID : consensus_1515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence
[AATAGAGCTCTGGTCTGTACTTCGAGCTTCTTCTCGAATGGGTGCAACCCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTGGTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACCGACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGTGGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGTGCCCGCGGAGCATATCTGAAGTGGAGAGAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAAAGGAGGGACAACATCGCATCTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCCCTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGC]
[+] EMBL BU804664 [AATAGAGCTCTGGTCTGTACTTCGAGCTTCTTCTCGAATGGGTGCAACCCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTGGTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACCGACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGTGGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGTGCCCGCGGAGCATATCTGAAGTGGAGAGAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAAAGGAGGGACAACATCGCATCTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCCCTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1515#0 AAAAACTTCGAGCTTCTTCTCGAATGGGTTTGTTTTTTTAAATCTGCCGGGGTTTGATGG 60
consensus_1515#1 ------------------------------------------------------------
consensus_1515#0 GTTCACCACTGCAGGCACTGCAAGAGGGCCGACTGCACAAAAGTCCAGCGTCCAACGTGC 120
consensus_1515#1 -------------------------------------------------------AATAG 5
*
consensus_1515#0 GGCGCTGGTCACGTTGTAGGAAAACGAGAGCGAGCAGCAACATCGATACAGAGGTGCAAC 180
consensus_1515#1 AGCTCTGGTC----TGTACTT---------CGAGCTTCTTC-TCGA---ATGGGTGCAAC 48
** ****** **** ***** * * **** * ********
consensus_1515#0 CCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTG 240
consensus_1515#1 CCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTG 108
************************************************************
consensus_1515#0 GTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACC 300
consensus_1515#1 GTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACC 168
************************************************************
consensus_1515#0 GACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGT 360
consensus_1515#1 GACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGT 228
************************************************************
consensus_1515#0 GGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGAGCCCGCGGAGCATATCTGAAGTGGAGA 420
consensus_1515#1 GGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGTGCCCGCGGAGCATATCTGAAGTGGAGA 288
******************************** ***************************
consensus_1515#0 GAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAA 480
consensus_1515#1 GAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAA 348
************************************************************
consensus_1515#0 AGGAGGGACAACATCGCAAAGCTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCC 540
consensus_1515#1 AGGAGGGACAACATCGCAT--CTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCC 406
****************** ***************************************
consensus_1515#0 CTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGCTGGTCTGGCTGGTGCG 600
consensus_1515#1 CTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGC---------------- 450
********************************************
consensus_1515#0 CTTGCAGGCCAGCACATCCAG 621
consensus_1515#1 ---------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |