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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[GGGCCACTTCACCACCGTTAGACATGGCGCTTCATTTACAGAGCAGTGGACTGATGGATATGCCTTCCAGAATCTAGTGAAACAGCAAGAGTGGATAAACCAACAGAGAGAGGACATTGAAAGGCAGAGAAAACTGCTTGCCAAGAGGAAACCGCCATCTTCAAGCAACTCCCAAGCCCTAACCGCAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAATGAACGGAGCTGAAAATGATCCCTTTCTAAAACCCACCCTACCTCAGCTACTCACACTAGCAGAGTACCACGAGCAGGAAGAGATCTTTAAACTGCGTCTGGGGCATCTCAAAAAGGAAGAAGCTGAAATCCAGGCAGAGCTGGAGCGTCTGGAGAGGGTGCGCAACCTTCACATTCGAGAGCTGAAGAGAATAAATAATGAAGACAGCTCACAATTTAAAGATCATCCAACACTGAATGAGCGATATCTGCTCCTCCACCTTCTAGGAAGAGGGGGGTTTAGTGAAGTTTACAAGGCTTTTGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATCGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCA]
[+] EMBL CA589014 [GGGCCACTTCACCACCGTTAGACATGGCGCTTCATTTACAGAGCAGTGGACTGATGGATATGCCTTCCAGAATCTAGTGAAACAGCAAGAGTGGATAAACCAACAGAGAGAGGACATTGAAAGGCAGAGAAAACTGCTTGCCAAGAGGAAACCGCCATCTTCAAGCAACTCCCAAGCCCTAACCGCAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAATGAACGGAGCTGAAAATGATCCCTTTCTAAAACCCACCCTACCTCAGCTACTCACACTAGCAGAGTACCACGAGCAGGAAGAGATCTTTAAACTGCGTCTGGGGCATCTCAAAAAGGAAGAAGCTGAAATCCAGGCAGAGCTGGAGCGTCTGGAGAGGGTGCGCAACCTTCACATTCGAGAGCTGAAGAGAATAAATAATGAAGACAGCTCACAATTTAAAGATCATCCAACACTGAATGAGCGATATCTGCTCCTCCACCTTCTAGGAAGAGGGGGGTTTAGTGAAGTTTACAAGGCTTTTGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATCGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCA]
consensusID : consensus_1523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence
[TGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGAACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTTTTGCACTGTAATGGAGTATTGTGAAGGCAACGACTTGGATTTCTACTTGAAGCAACATAAGCTTATGTCTGAGAAAGAGGCACGATCAATCGTCATGCAGATTGTGAATGCTTTAAAATATCTGAACGAAATCAAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAATATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCCAAAATCATGGATGATGACGACTACGGTGTAGATGGGATGGATCTGACATCACAGGGTGGTGGGACTTATTGATACCTCCCCCCTGAATGCTTTGTAGGGGGGAGAGAACCACCAAAGATCTCCAACAAGGTGGATGTTTGGTCTGTTGGCGTTATTGTCCTCCAGCGTCTGGATGCAAGAAAACCTGGTGGCCAG]
[+] EMBL CA590227 [TGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGAACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTTTTGCACTGTAATGGAGTATTGTGAAGGCAACGACTTGGATTTCTACTTGAAGCAACATAAGCTTATGTCTGAGAAAGAGGCACGATCAATCGTCATGCAGATTGTGAATGCTTTAAAATATCTGAACGAAATCAAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAATATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCCAAAATCATGGATGATGACGACTACGGTGTAGATGGGATGGATCTGACATCACAGGGTGGTGGGACTTATTGATACCTCCCCCCTGAATGCTTTGTAGGGGGGAGAGAACCACCAAAGATCTCCAACAAGGTGGATGTTTGGTCTGTTGGCGTTATTGTCCTCCAGCGTCTGGATGCAAGAAAACCTGGTGGCCAG]
[+] EMBL BU807443 [ GATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGAACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTTTTGCACTGTAATGGAGTATTGTGAAGGCAACGACTTGGATTTCTACTTGAAGCAACATAAGCTTATGTCTGATAAAGAGGCACGATCAATCGTCATGCAGATTGTGAATGCTTTAAAATATCTGAACGAAATCAAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAATATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCCAAAATCATGGATGATGACAACTACGGTGTAGATGGGATGGATCTGACATCACAGGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1523#0 -GGGCCACTTCACCACCGTTAGAC----ATGGCGCTTCATTTACAGAGCAGTGGACTGAT 55
consensus_1523#1 TGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAG 60
* ** * ** ** ** * ** * ** ** * ** **
consensus_1523#0 GGATATGCCTTCCAGAATCTAGTGAAACAGCAAGAGTGGATAAACCAACAGAGAGAGGAC 115
consensus_1523#1 GGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGA 120
*** * ** *** ** ** ** * ** * * * *
consensus_1523#0 ATTGAAAGGCAGAGAAAACT----GCTTGCCAAGAGGAAACCGCCATCTTCAAGCAACTC 171
consensus_1523#1 ACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTT 180
* ** * * * * *** * * * * ** * *
consensus_1523#0 CCAAGCCCTAACCGCAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAATGAACGGAGC 231
consensus_1523#1 TTGCACTGTAATGGAGTATTGTGA----AGGCAACGACTTGGATTTCTACTTGAAGCAAC 236
* *** * * * *** * ****** * * * * * *
consensus_1523#0 TGAAAATGATCCCTTTCTAAAACCCACCCTACCTCAGCTACTCACACTAGCAGAGTACCA 291
consensus_1523#1 ATAAGCTTATGTCTGAGAAAGAGGCACGATCAATC-GTCATGCAGATTGTGAATGCTTTA 295
** * ** ** ** * *** * ** * * ** * * * * *
consensus_1523#0 CGAG--CAGGAAGAGATCTTTAAACTGCGTCTGGGGCATCTCAAAAAGGAAGAAGCTGAA 349
consensus_1523#1 AAATATCTGAACGAAATC---AAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAAT 352
* * * * ** *** **** * * *** * * * ** * *
consensus_1523#0 ATCCAGGCAGAGC-TGGAGCGTC-TGGAGAGGGTGCGCAACCTTC-ACATTCGAGAGCTG 406
consensus_1523#1 ATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCC 412
*** * * * *** ** * ** *** * * ** * * ** ** * *
consensus_1523#0 AAGAGAATAAATAATGAAGAC---AGCTCACAATTTAAAGATCATCCAACACTGAATGAG 463
consensus_1523#1 AAAATCATGGATGATGACGACTACGGTGTAGATGGGATGGATCTGACATCACAGGGTGGT 472
** * ** ** **** *** * * * * **** ** *** * **
consensus_1523#0 CGA---TATCTGCTCCTCCACCTTCTAGGAAGAGGGGGGTTTAGTGAAGTTTACAAGGCT 520
consensus_1523#1 GGGACTTATTGATACCTCCCCCCTGAATGCTTTGTAGGGGGGAGAGAACCACCAAAGATC 532
* *** ***** ** * * * * *** ** *** ***
consensus_1523#0 TTTGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATCGG 580
consensus_1523#1 TCCAACAAGGTGGATGTTTGGTCTGTTGGCGTTATTGTCCTCCAGCGT--------CTGG 584
* ** * * ** * * ** ** ** * **** *** * * **
consensus_1523#0 AGGGAGGAGAAGAAAGAAAACTATCACAAACATGCA 616
consensus_1523#1 ATGCAAGAAAACCTGGTGGCCAG------------- 607
* * * ** ** * *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |