These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [GTCCTGGAGGATCGTTTAGCACGGAAGCGGAGTGGCTAACACACACACCGAACACAACAATGGCTTCTACGATGCTAAATATGACGCGGAGCTGCTCGCTCAGAACTTCCTGGGCCGCACGGTTTGGCACAAGAGCTCTGAGCACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGTCCTGGTATGAAGAACATAGTCCTGGTTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAACCACATACGCTGACCTAATGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCACAAGACGGACCTACCCAGAGATGCTGTTGACTACATCATCTATGGAACAGTCATCCAAGAGGTCAAAACCAGCAATATAGCCAGAGAGGCTGCGTTGGGGGCAGGATTCTCTGACAAGATTCCAGCTCACACTGTCACCATGGCCTGCATCTCATCCAACCAGGCAATGACCTCAGCTGCTGGTCTGATTGCTGCTGGTCAGTGTGACGCAGTCGTAGCAGGAGGAGTGGAATTCATGTCTGACGTTCCGATCCGTCACAGCCGAAAGATGAGGAAGACCATGTTGTCCCTC] [+] EMBL CA590993 [GTCCTGGAGGATCGTTTAGCACGGAAGCGGAGTGGCTAACACACACACCGAACACAACAATGGCTTCTACGATGCTAAATATGACGCGGAGCTGCTCGCTCAGAACTTCCTGGGCCGCACGGTTTGGCACAAGAGCTCTGAGCACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGTCCTGGTATGAAGAACATAGTCCTGGTTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAACCACATACGCTGACCTAATGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCACAAGACGGACCTACCCAGAGATGCTGTTGACTACATCATCTATGGAACAGTCATCCAAGAGGTCAAAACCAGCAATATAGCCAGAGAGGCTGCGTTGGGGGCAGGATTCTCTGACAAGATTCCAGCTCACACTGTCACCATGGCCTGCATCTCATCCAACCAGGCAATGACCTCAGCTGCTGGTCTGATTGCTGCTGGTCAGTGTGACGCAGTCGTAGCAGGAGGAGTGGAATTCATGTCTGACGTTCCGATCCGTCACAGCCGAAAGATGAGGAAGACCATGTTGTCCCTC] consensusID : consensus_1524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence [TTATTTATCATCTACAGGCAGTAGTAGTGGCATTTCGTTCCATTTCGCATTGCATTAAATATGATTCCATATCCCATCTGTCTGTAGAACACAACAATGGCTTCTACGATGCTAAATATGACGCGGAGCTGCTCGCTCAGAACTGGGCGGGNCGGCACGGATTGGCACAAGAGCTCTGAGCACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGGCCTGGTATGAAGAACATAGTCCTGGGTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAACCACATACGCTGACCTATGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCACAAGACGGACCTACCCAGAGATGCTGGTGACTACATCATCTATGGAACAGTCATCCAAGAGGTCAAAACCAGCAATATAGCCAG] [+] EMBL FR0062651 [TTATTTATCATCTACAGGCAGTAGTAGTGGCATTTCGTTCCATTTCGCATTGCATTAAATATGATTCCATATCCCATCTGTCTGTAGAACACAACAATGGCTTCTACGATGCTAAATATGACGCGGAGCTGCTCGCTCAGAACTTCCTGGGCCGGCACGG TTGGCACAAGAGCTCTGAGCACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAAAAGACTCTGGCTCGG ] [+] EMBL FR0061050 [ CGGAGCTGCTCGCTCAGAACTGGGCTGGNCCGCACGGATTGGCACAAGAGCTCTGAGCACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGTCCTGGTATGAAGAACATAGTCCTGGGTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAACCACATACGCTGACCTATGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCACAAGACGGACCTACCCAGAGATGCTGGTGACTACATCATCTATGGAACAGTCATCCAAGAGGTCAAAACCAGCAATATAGCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1524#0 ---------------------------------GTCCTGGAGGATCGTTTAGCACGGAAG 27 consensus_1524#1 TTATTTATCATCTACAGGCAGTAGTAGTGGCATTTCGTTCCATTTCGCATTGCATTAAAT 60 ** * *** * *** ** consensus_1524#0 CGGAGTGGCTAACACACACACC----GAACACAACAATGGCTTCTACGATGCTAAATATG 83 consensus_1524#1 ATGATTCCATATCCCATCTGTCTGTAGAACACAACAATGGCTTCTACGATGCTAAATATG 120 ** * ** * ** * ********************************** consensus_1524#0 ACGCGGAGCTGCTCGCTCAGAACTTCCTGGGCCG-CACGGTTTGGCACAAGAGCTCTGAG 142 consensus_1524#1 ACGCGGAGCTGCTCGCTCAGAACTGGGCGGGNCGGCACGGATTGGCACAAGAGCTCTGAG 180 ************************ *** ** ***** ******************* consensus_1524#0 CACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGTCC 202 consensus_1524#1 CACAACAGCCCAGCTCCAGGCTCAGGTTCAGGCAAAAAGTAAGAAGACTCTGGCTCGGCC 240 ********************************************************* ** consensus_1524#0 TGGTATGAAGAACATAGTCCTGGTTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAAC 262 consensus_1524#1 TGGTATGAAGAACATAGTCCTGGGTGAAGGGGTCCGAACCCCCTTCCTGATGTCAGGAAC 300 *********************** ************************************ consensus_1524#0 CACATACGCTGACCTAATGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCA 322 consensus_1524#1 CACATACGCTGACCTA-TGCCCCACGACCTGGCAAGAGCCGCCCTGCTGGGCCTGCTGCA 359 **************** ******************************************* consensus_1524#0 CAAGACGGACCTACCCAGAGATGCTGTTGACTACATCATCTATGGAACAGTCATCCAAGA 382 consensus_1524#1 CAAGACGGACCTACCCAGAGATGCTGGTGACTACATCATCTATGGAACAGTCATCCAAGA 419 ************************** ********************************* consensus_1524#0 GGTCAAAACCAGCAATATAGCCAGAGAGGCTGCGTTGGGGGCAGGATTCTCTGACAAGAT 442 consensus_1524#1 GGTCAAAACCAGCAATATAGCCAG------------------------------------ 443 ************************ consensus_1524#0 TCCAGCTCACACTGTCACCATGGCCTGCATCTCATCCAACCAGGCAATGACCTCAGCTGC 502 consensus_1524#1 ------------------------------------------------------------ consensus_1524#0 TGGTCTGATTGCTGCTGGTCAGTGTGACGCAGTCGTAGCAGGAGGAGTGGAATTCATGTC 562 consensus_1524#1 ------------------------------------------------------------ consensus_1524#0 TGACGTTCCGATCCGTCACAGCCGAAAGATGAGGAAGACCATGTTGTCCCTC 614 consensus_1524#1 ---------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |