These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [TCTGTGTCGCTCTGCAGACGAGCCGCTCCTTCCTCTGCTGCCGTAAAGATAAAACAACTCGGATAAGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTCTAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAGCTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGACCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAAGCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGGAGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCAGCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGACGGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTTTGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAAGGAGCCGACGGGAAGTGGCAGTTGGTCCACAGGAACGAGGTGGTGAAGAACAACCTGAATCCCACCTGGAAGAAGTTCACCGTCCCTCTCCAGACGTTCTGCTCCAGCGACCTGGAAAGACCTCTGAAGGTGGACTGTCACGACTACGACAGCGACGGACCTCATGACCTCATCGGTTCCTTCACCACTAAAGTGTCTGAGCTCCAGAAGACAGCCCATGGCTCA] [+] EMBL CA588204 [TCTGTGTCGCTCTGCAGACGAGCCGCTCCTTCCTCTGCTGCCGTAAAGATAAAACAACTCGGATAAGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTCTAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAGCTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGACCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAAGCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGGAGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCAGCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGACGGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTTTGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAAGGAGCCGACGGGAAGTGGCAGTTGGTCCACAGGACCGAGGTGGTGAAGAACAACCTGAATCCCACCTGGAAGAAGTTCACCGTCCCTCTCCAGACGTTCTGCTCCAGCGACCTGGAAAGACCTCTGAAGGTGGACTGTCACGACTACGACAGCGACGGACCTCATGACCTCATCGGTTCCTTCACCACTAAAGTGTCTGAGCTCCAGAAGACAGCCCATGGCTCA] [+] EMBL CA588920 [ CTGCAGACGAGCCGCTCCTTCCTCTGCTG TGTAAAGATAAAACAACTCGGATAAGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTCTAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAGCTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGACCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAAGCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGGAGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCAGCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGACGGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTTTGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAAGGACCCGACGGGAAGTGGCAGTTGGTCCACAGGAACGAAGTGGTGAAAAAC ] consensusID : consensus_1527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [ACGAGAGACGAGAGGAGAGAAGAGTAGAGAACATTAATGAATTAAACTTCATTGTCTTTCTTGACAGATTTCTCGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTCTAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAGCTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGACCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAAGCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGGAGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCAGCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGACGGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTTTGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAA] [+] EMBL BU804600 [ACGAGAGACGAGAGGAGAGAAGAGTAGAGAACATTAATGAATTAAACTTCATTGTCTTTCTTGACAGATTTCTCGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTCTAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAGCTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGACCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAAGCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGGAGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCAGCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGACGGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTTTGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1527#0 TCTGTGTCGCTCTGCAGACGAGCCGCTCCTTCCTCTGCTGCCGTAAAGATAA--AACAAC 58 consensus_1527#1 -ACGAGAGACGAGAGGAGAGAAGAGTAGAGAACATTAATGAATTAAACTTCATTGTCTTT 59 * * * ** * * * ** **** * * * consensus_1527#0 TCGGATAA-------GATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTC 111 consensus_1527#1 CTTGACAGATTTCTCGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTC 119 ** * ********************************************* consensus_1527#0 TAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAG 171 consensus_1527#1 TAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAG 179 ************************************************************ consensus_1527#0 CTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGA 231 consensus_1527#1 CTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGA 239 ************************************************************ consensus_1527#0 CCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAA 291 consensus_1527#1 CCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAA 299 ************************************************************ consensus_1527#0 GCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGG 351 consensus_1527#1 GCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGG 359 ************************************************************ consensus_1527#0 AGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCA 411 consensus_1527#1 AGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCA 419 ************************************************************ consensus_1527#0 GCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGAC 471 consensus_1527#1 GCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGAC 479 ************************************************************ consensus_1527#0 GGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTT 531 consensus_1527#1 GGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTT 539 ************************************************************ consensus_1527#0 TGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAAGGAGCCGACGGGAAGTGGCAGTT 591 consensus_1527#1 TGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAA----------------------- 576 ************************************* consensus_1527#0 GGTCCACAGGAACGAGGTGGTGAAGAACAACCTGAATCCCACCTGGAAGAAGTTCACCGT 651 consensus_1527#1 ------------------------------------------------------------ consensus_1527#0 CCCTCTCCAGACGTTCTGCTCCAGCGACCTGGAAAGACCTCTGAAGGTGGACTGTCACGA 711 consensus_1527#1 ------------------------------------------------------------ consensus_1527#0 CTACGACAGCGACGGACCTCATGACCTCATCGGTTCCTTCACCACTAAAGTGTCTGAGCT 771 consensus_1527#1 ------------------------------------------------------------ consensus_1527#0 CCAGAAGACAGCCCATGGCTCA 793 consensus_1527#1 ---------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |