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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence
[ACCACTAGAGAGGTACTTCCTAACCCAGGGCTGGACCTGCGAACCTCAAATCACGATGATTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAGCGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTGCCTTCTTGATTCCCTACCTGATCCTGCTGGTGCTGGAAGGAATGCCTCTCCTGCTGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGCAGCGTGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTCCATGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGTATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAATAGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGAGTGACACTAAAGAGTACGACCTCCATAGAGGACTCTGGAGGGATCAACTGGCCGATAGTTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGCACCTCAGGCAAGGCTGTGTACGTCACCGCTATCCTGCCTTACATAGTGCTCGGCATCTTTCTGATCCGTGGGCTGACACTGAAAGGTGCAATGAGTGGGATCGAATTCCTCTTCGTGCCAGATGTGACTGAGTTAAGCACCCCA]
[+] EMBL CA588117 [ACCACTATACAGGTACTTCCTAACCCAGGGCTGGACCTGCGAATC CCTTTCACGATGATTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTGCCTTCTTGATTCCCTACCTGATCCTGCTGGTGCTGGAAGGAATGCCTCTCCTGCTGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGCAGCGTGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTCCATGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGTATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAATAGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGAGTGACACTAAAGAGTACGACCTCCATAGAGGACTCTGGAGGGATCAACTGGCCGATAGTTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGCACCTCAGGCAAGGCTGTGTACGTCACCGCTATCCTGCCTTACATAGTGCTCGGCATCTTTCTGATCCGTGGGCTGACACTGAAAGGTGCAATGAGTGGGATCGAATTCCTCTTCGTGCCAGATGTGACTGAGTTAAGCACCCCA]
[+] EMBL CA591488 [ AGAGTGGTACTTCCTAACCCAGGGCTGGACCTGCGAACCTCAAATCACGATGATTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAGCGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTGCCTTCTTGATTCCCTACCTGATTCTGCTGGTGCTGGAAGGAATGCCTCTCCTGCTGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGCAGCGTGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTCCATGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGTATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAATAGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGAGTGACACTAAAGAGTACGACCTCCATAGAGGACTCTGGAGGGATCAACTGGCCGATAGTTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGC ]
consensusID : consensus_1529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[CCAGGGCTGGACCTGCGAATCCCAAATCACGATGGTTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTAAGGTCGGTTGACTTTTAAAGGCATCCCTATAGCAACTTTTAACATTCATTTGTTAAATTTTTGATTATTTCTTGTAGCAACAACTGTGTCAAAGATGCAATAATCCTGTCTGTGGTCACCGGCTTCACCTCAGTCTACGCTGCCATGGTCACGTACTCCATCATTGGTTTCAGAGCCACTGAAAAATATGACAACTGCATCGACAATAACATCGTGAGATTACTAAACGCCTTCAGCCTCCCTGAAGACAGCATCACTGCGGACAACTATGAAACAGCCTTCAAGCATCTGAACAGCTCCTCTCATGACATCGTGCTTGGACTGGACATAGAAAAGTACAACATGCAGAGGCTTCTCAGTGAGGGAGTG]
[+] EMBL CA589946 [CCAGGGCTGGACCTGCGAATCCCAAATCACGATGGTTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTAAGGTCGGTTGACTTTTAAAGGCATCCCTATAGCAACTTTTAACATTCATTTGTTAAATTTTTGATTATTTCTTGTAGCAACAACTGTGTCAAAGATGCAATAATCCTGTCTGTGGTCACCGGCTTCACCTCAGTCTACGCTGCCATGGTCACGTACTCCATCATTGGTTTCAGAGCCACTGAAAAATATGACAACTGCATCGACAATAACATCGTGAGATTACTAAACGCCTTCAGCCTCCCTGAAGACAGCATCACTGCGGACAACTATGAAACAGCCTTCAAGCATCTGAACAGCTCCTCTCATGACATCGTGCTTGGACTGGACATAGAAAAGTACAACATGCAGAGGCTTCTCAGTGAGGGAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1529#0 ACCACTAGAGAGGTACTTCCTAACCCAGGGCTGGACCTGCGAACCTCAAATCACGATGAT 60
consensus_1529#1 ------------------------CCAGGGCTGGACCTGCGAATCCCAAATCACGATGGT 36
******************* * ************ *
consensus_1529#0 TTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAG 120
consensus_1529#1 TTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAG 96
************************************************************
consensus_1529#0 TACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAGCGTGTGGCGATTCCCATAC 180
consensus_1529#1 TACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATAC 156
**************************************** *******************
consensus_1529#0 TTGTGCCAAACTCATGGCGGAGGTGCCTTC--TTGATTCCCTACCTGATCCTGCTGGTGC 238
consensus_1529#1 TTGTGCCAAACTCATGGCGGAGGTAAGGTCGGTTGACTTTTAAAGGCATCCCTATAGCAA 216
************************ ** **** * * **** * *
consensus_1529#0 TGGAAGGAATGCCTCTCCTGC-TGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGC 297
consensus_1529#1 CTTTTAACATTCATTTGTTAAATTTTTGATTATTTCTTGTAGCAACAACTGTGTCAAAGA 276
** * * * * * * ** * * * * **** ** * ** *
consensus_1529#0 AGCG-TGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTC-CA 355
consensus_1529#1 TGCAATAATCCTGTCTGTGGTCACCGGCTTCACCTCAGTCTACGCTGCCATGGTCACGTA 336
** * *** * ** * ** * * * * ** * * * *
consensus_1529#0 TGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGT 415
consensus_1529#1 CTCCATCATTGGTTTCAGAGCCACTGAAAAATATGACAACTGCATCGACAATAACATCGT 396
* *** * **** * * * *** * * ** * **
consensus_1529#0 -ATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAAT 474
consensus_1529#1 GAGATTACTAAACGCCTTCAGCCTCCCTGAAGACAGCATCACTGC-----GGACAACTAT 451
* * *** * **** ** * * * ******* * ** **
consensus_1529#0 AGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGA 534
consensus_1529#1 GAAACAGCCTTCA----AGCATCTGAACAGCTCCTCTC-----ATGACATCGTGCTTGGA 502
**** ** ** * * ***** * * * ** ** ** * * **
consensus_1529#0 GTG-ACACTAAAGAGTACGACCTCCATAGAGGACTCTG-GAGGGATCAACTGGCCGATAG 592
consensus_1529#1 CTGGACATAGAAAAGTACAACATGCAGAGGCTTCTCAGTGAGGGAGTG------------ 550
** *** ** ***** ** * ** ** *** * ******
consensus_1529#0 TTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGCA 652
consensus_1529#1 ------------------------------------------------------------
consensus_1529#0 CCTCAGGCAAGGCTGTGTACGTCACCGCTATCCTGCCTTACATAGTGCTCGGCATCTTTC 712
consensus_1529#1 ------------------------------------------------------------
consensus_1529#0 TGATCCGTGGGCTGACACTGAAAGGTGCAATGAGTGGGATCGAATTCCTCTTCGTGCCAG 772
consensus_1529#1 ------------------------------------------------------------
consensus_1529#0 ATGTGACTGAGTTAAGCACCCCA 795
consensus_1529#1 -----------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |