Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1529 cluster # 1529       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1529#0 length = 795 sequences # 2  
consensus_1529#1 length = 550 sequences # 1  

consensusID : consensus_1529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 795
fasta sequence
                              [ACCACTAGAGAGGTACTTCCTAACCCAGGGCTGGACCTGCGAACCTCAAATCACGATGATTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAGCGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTGCCTTCTTGATTCCCTACCTGATCCTGCTGGTGCTGGAAGGAATGCCTCTCCTGCTGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGCAGCGTGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTCCATGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGTATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAATAGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGAGTGACACTAAAGAGTACGACCTCCATAGAGGACTCTGGAGGGATCAACTGGCCGATAGTTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGCACCTCAGGCAAGGCTGTGTACGTCACCGCTATCCTGCCTTACATAGTGCTCGGCATCTTTCTGATCCGTGGGCTGACACTGAAAGGTGCAATGAGTGGGATCGAATTCCTCTTCGTGCCAGATGTGACTGAGTTAAGCACCCCA]

[+] EMBL CA588117             [ACCACTATACAGGTACTTCCTAACCCAGGGCTGGACCTGCGAATC CCTTTCACGATGATTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTGCCTTCTTGATTCCCTACCTGATCCTGCTGGTGCTGGAAGGAATGCCTCTCCTGCTGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGCAGCGTGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTCCATGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGTATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAATAGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGAGTGACACTAAAGAGTACGACCTCCATAGAGGACTCTGGAGGGATCAACTGGCCGATAGTTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGCACCTCAGGCAAGGCTGTGTACGTCACCGCTATCCTGCCTTACATAGTGCTCGGCATCTTTCTGATCCGTGGGCTGACACTGAAAGGTGCAATGAGTGGGATCGAATTCCTCTTCGTGCCAGATGTGACTGAGTTAAGCACCCCA]
[+] EMBL CA591488             [      AGAGTGGTACTTCCTAACCCAGGGCTGGACCTGCGAACCTCAAATCACGATGATTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAGCGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTGCCTTCTTGATTCCCTACCTGATTCTGCTGGTGCTGGAAGGAATGCCTCTCCTGCTGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGCAGCGTGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTCCATGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGTATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAATAGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGAGTGACACTAAAGAGTACGACCTCCATAGAGGACTCTGGAGGGATCAACTGGCCGATAGTTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGC                                                                                                                                                ]


>consensus_1529#0 ACCACTAGAGAGGTACTTCCTAACCCAGGGCTGGACCTGCGAACCTCAAATCACGATGAT TTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAG TACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAGCGTGTGGCGATTCCCATAC TTGTGCCAAACTCATGGCGGAGGTGCCTTCTTGATTCCCTACCTGATCCTGCTGGTGCTG GAAGGAATGCCTCTCCTGCTGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGCAGC GTGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTCCATGTTG GTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGTATCTC TTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAATAGGACA GGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGAGTGACA CTAAAGAGTACGACCTCCATAGAGGACTCTGGAGGGATCAACTGGCCGATAGTTGCCTGC TTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGCACCTCAGGC AAGGCTGTGTACGTCACCGCTATCCTGCCTTACATAGTGCTCGGCATCTTTCTGATCCGT GGGCTGACACTGAAAGGTGCAATGAGTGGGATCGAATTCCTCTTCGTGCCAGATGTGACT GAGTTAAGCACCCCA



consensusID : consensus_1529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence
                              [CCAGGGCTGGACCTGCGAATCCCAAATCACGATGGTTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTAAGGTCGGTTGACTTTTAAAGGCATCCCTATAGCAACTTTTAACATTCATTTGTTAAATTTTTGATTATTTCTTGTAGCAACAACTGTGTCAAAGATGCAATAATCCTGTCTGTGGTCACCGGCTTCACCTCAGTCTACGCTGCCATGGTCACGTACTCCATCATTGGTTTCAGAGCCACTGAAAAATATGACAACTGCATCGACAATAACATCGTGAGATTACTAAACGCCTTCAGCCTCCCTGAAGACAGCATCACTGCGGACAACTATGAAACAGCCTTCAAGCATCTGAACAGCTCCTCTCATGACATCGTGCTTGGACTGGACATAGAAAAGTACAACATGCAGAGGCTTCTCAGTGAGGGAGTG]

[+] EMBL CA589946             [CCAGGGCTGGACCTGCGAATCCCAAATCACGATGGTTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTAAGGTCGGTTGACTTTTAAAGGCATCCCTATAGCAACTTTTAACATTCATTTGTTAAATTTTTGATTATTTCTTGTAGCAACAACTGTGTCAAAGATGCAATAATCCTGTCTGTGGTCACCGGCTTCACCTCAGTCTACGCTGCCATGGTCACGTACTCCATCATTGGTTTCAGAGCCACTGAAAAATATGACAACTGCATCGACAATAACATCGTGAGATTACTAAACGCCTTCAGCCTCCCTGAAGACAGCATCACTGCGGACAACTATGAAACAGCCTTCAAGCATCTGAACAGCTCCTCTCATGACATCGTGCTTGGACTGGACATAGAAAAGTACAACATGCAGAGGCTTCTCAGTGAGGGAGTG]


>consensus_1529#1 CCAGGGCTGGACCTGCGAATCCCAAATCACGATGGTTTGGACAGGATGGAGAAAGAAGAT GCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTC TGCATTGGGCTCGGAAACGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGT AAGGTCGGTTGACTTTTAAAGGCATCCCTATAGCAACTTTTAACATTCATTTGTTAAATT TTTGATTATTTCTTGTAGCAACAACTGTGTCAAAGATGCAATAATCCTGTCTGTGGTCAC CGGCTTCACCTCAGTCTACGCTGCCATGGTCACGTACTCCATCATTGGTTTCAGAGCCAC TGAAAAATATGACAACTGCATCGACAATAACATCGTGAGATTACTAAACGCCTTCAGCCT CCCTGAAGACAGCATCACTGCGGACAACTATGAAACAGCCTTCAAGCATCTGAACAGCTC CTCTCATGACATCGTGCTTGGACTGGACATAGAAAAGTACAACATGCAGAGGCTTCTCAG TGAGGGAGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1529#0      ACCACTAGAGAGGTACTTCCTAACCCAGGGCTGGACCTGCGAACCTCAAATCACGATGAT 60
consensus_1529#1      ------------------------CCAGGGCTGGACCTGCGAATCCCAAATCACGATGGT 36
                                              ******************* * ************ *

consensus_1529#0      TTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAG 120
consensus_1529#1      TTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAG 96
                      ************************************************************

consensus_1529#0      TACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAGCGTGTGGCGATTCCCATAC 180
consensus_1529#1      TACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATAC 156
                      **************************************** *******************

consensus_1529#0      TTGTGCCAAACTCATGGCGGAGGTGCCTTC--TTGATTCCCTACCTGATCCTGCTGGTGC 238
consensus_1529#1      TTGTGCCAAACTCATGGCGGAGGTAAGGTCGGTTGACTTTTAAAGGCATCCCTATAGCAA 216
                      ************************    **  **** *    *    ****   * *   

consensus_1529#0      TGGAAGGAATGCCTCTCCTGC-TGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGC 297
consensus_1529#1      CTTTTAACATTCATTTGTTAAATTTTTGATTATTTCTTGTAGCAACAACTGTGTCAAAGA 276
                              ** * * *  *   *  * ** * *  * *    ****  **  *  ** * 

consensus_1529#0      AGCG-TGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTC-CA 355
consensus_1529#1      TGCAATAATCCTGTCTGTGGTCACCGGCTTCACCTCAGTCTACGCTGCCATGGTCACGTA 336
                       **  *     ***    *  ** * **     *     *  *   *  ** * * *  *

consensus_1529#0      TGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGT 415
consensus_1529#1      CTCCATCATTGGTTTCAGAGCCACTGAAAAATATGACAACTGCATCGACAATAACATCGT 396
                              *   ***  *    **** *  * *  ***     * *    **    * **

consensus_1529#0      -ATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAAT 474
consensus_1529#1      GAGATTACTAAACGCCTTCAGCCTCCCTGAAGACAGCATCACTGC-----GGACAACTAT 451
                       *  *   ***   * ****    **   *  *  * *******        *  ** **

consensus_1529#0      AGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGA 534
consensus_1529#1      GAAACAGCCTTCA----AGCATCTGAACAGCTCCTCTC-----ATGACATCGTGCTTGGA 502
                         ****  **      **  * * *****  *  * *     ** ** ** *   * **

consensus_1529#0      GTG-ACACTAAAGAGTACGACCTCCATAGAGGACTCTG-GAGGGATCAACTGGCCGATAG 592
consensus_1529#1      CTGGACATAGAAAAGTACAACATGCAGAGGCTTCTCAGTGAGGGAGTG------------ 550
                       ** ***   ** ***** ** * ** **    *** * ******               

consensus_1529#0      TTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGCA 652
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      CCTCAGGCAAGGCTGTGTACGTCACCGCTATCCTGCCTTACATAGTGCTCGGCATCTTTC 712
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      TGATCCGTGGGCTGACACTGAAAGGTGCAATGAGTGGGATCGAATTCCTCTTCGTGCCAG 772
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      ATGTGACTGAGTTAAGCACCCCA 795
consensus_1529#1      -----------------------
                                             




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)