|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 642 fasta sequence
[CGGCCCTTTGCGTTGCCGTTTGGTTGGGAACGCTGCTAAAGGTACGTACGCGCCACACGGGCAGCAGTTGGGATTTGTGGCTGTTATTTTGTGTGGCATTCAACGCTCAGATGACCGAGTGAGGGGAAAAGTGACGGAGGCACAGGCAGAGATTCACAAGAGGAAAAGCATGAGTGAGTGTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCCCACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGAGAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCCTCCAACCTCTCCCATGGCGTCCAAAGGTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGAAAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGGCAAGCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCATGATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGATCTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAG]
[+] EMBL CA589790 [CGGCCCTTTGCGTTGCCGTTTGGTTGGGAACGCTGCTAAAGGTACGTACGCGCCACACGGGCAGCAGTTGGGATTTGTGGCTGTTATTTTGTGTGGCATTCAACGCTCAGATGACCGAGTGAGGGGAAAAGTGACGGATCCACAGGCAGAGATTCACAAGAGGAAAAGCATGTGTGAGTGTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCCCACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGAGAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCCTCCAACCTCTCCCATCGCGTCCAAAGTTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGAAAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGCCAAGCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCATGATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGATCTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAG]
[+] EMBL FR0059634 [ TTACCGAGTGAGGGGAAAAGTGACGGAGGCACAGGCAGATATTCACAAGAGGAAAAGCATGAGTGAGTGTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGA CCCCCCCCACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGAGAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCCTCCAACCTCTCCCATGGCGTCCAAAGGTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGAAAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGAAGTGAGGTACAAGGGCAAGCT ]
consensusID : consensus_1530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CCTTTGCGCTGCCGTTTGGTTGGGAACGCTGCTAAAGATTCACAAGAGGAAAAGCATGAGTGAGTGTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCCCACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGAGAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCCTCCAACCTCTCCCATCGCGTCCAAAGTTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGAAAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGCCAAGCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCATGATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGATCTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAGCGATCAGGAGTGATTGAGCATGAGCACGCGGTAAACAAGATCTCCTTCATCGCCAGAGATGTGACAGACAACCGGGCATTCGGATACGTGTGCGGCGCCCGAAGG]
[+] EMBL CA590774 [CCTTTGCGCTGCCGTTTGGTTGGGAACGCTGCTAAAGATTCACAAGAGGAAAAGCATGAGTGAGTGTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCCCACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGAGAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCCTCCAACCTCTCCCATCGCGTCCAAAGTTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGAAAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGCCAAGCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCATGATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGATCTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAGCGATCAGGAGTGATTGAGCATGAGCACGCGGTAAACAAGATCTCCTTCATCGCCAGAGATGTGACAGACAACCGGGCATTCGGATACGTGTGCGGCGCCCGAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1530#0 CGGCCCTTTGCGTTGCCGTTTGGTTGGGAACGCTGCTAAAGGTACGTACGCGCCACACGG 60
consensus_1530#1 ------------------------------------------------------------
consensus_1530#0 GCAGCAGTTGGGATTTGTGGCTGTTATTTTGTGTGGCATTCAACGCTCAGATGACCGAGT 120
consensus_1530#1 -------------------------------------------------------CCTTT 5
* *
consensus_1530#0 GAGGGGAAAAGTGAC-GGAGGCACAGGCAGAGATTCACAAGAGGAAAAGCATGAGTGAGT 179
consensus_1530#1 GCGCTGCCGTTTGGTTGGGAACGCTGCTAAAGATTCACAAGAGGAAAAGCATGAGTGAGT 65
* * * ** ** * * * * ******************************
consensus_1530#0 GTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCC 239
consensus_1530#1 GTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCC 125
************************************************************
consensus_1530#0 CACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGA 299
consensus_1530#1 CACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGA 185
************************************************************
consensus_1530#0 GAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCC 359
consensus_1530#1 GAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCC 245
************************************************************
consensus_1530#0 TCCAACCTCTCCCATGGCGTCCAAAGGTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGA 419
consensus_1530#1 TCCAACCTCTCCCATCGCGTCCAAAGTTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGA 305
*************** ********** *********************************
consensus_1530#0 AAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGGCAA 479
consensus_1530#1 AAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGCCAA 365
******************************************************** ***
consensus_1530#0 GCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCAT 539
consensus_1530#1 GCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCAT 425
************************************************************
consensus_1530#0 GATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGAT 599
consensus_1530#1 GATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGAT 485
************************************************************
consensus_1530#0 CTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAG----------------- 642
consensus_1530#1 CTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAGCGATCAGGAGTGATTGA 545
*******************************************
consensus_1530#0 ------------------------------------------------------------
consensus_1530#1 GCATGAGCACGCGGTAAACAAGATCTCCTTCATCGCCAGAGATGTGACAGACAACCGGGC 605
consensus_1530#0 ----------------------------
consensus_1530#1 ATTCGGATACGTGTGCGGCGCCCGAAGG 633
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |