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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence
[AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGAATTATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTTACAGTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATATCCCCCCCAGGGTGCTGGTTCCTACGGCCAGCCTCCA]
[+] EMBL BU807512 [AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGAATTATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGC TGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATAT ]
[+] EMBL CA589715 [ CTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGAATTATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTTACAGTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATATCCCCCCCAGGGTGCTGGTTCCTACGGCCAGCCTCCA]
consensusID : consensus_1533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGCAGAATTATGGCCAACAGAATCATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACTGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCAT]
[+] EMBL BU807402 [AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGCAGAATTATGGCCAACAGAATCATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACTGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1533#0 AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCC 60
consensus_1533#1 AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCC 60
************************************************************
consensus_1533#0 CAAAGTTATGGGCAGTCTACACAG------------------AATTATGGTTCATATGCC 102
consensus_1533#1 CAAAGTTATGGGCAGTCTACACAGCAGAATTATGGCCAACAGAATCATGGTTCATATGCC 120
************************ *** **************
consensus_1533#0 CAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTAC 162
consensus_1533#1 CAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTAC 180
************************************************************
consensus_1533#0 CCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCT 222
consensus_1533#1 CCACAGCAACAACAACAGTACAGCTCCTCTTACTGCCAACAGGCCTCAGCTGGCTATCCT 240
********************************* **************************
consensus_1533#0 GCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGC 282
consensus_1533#1 GCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGC 300
************************************************************
consensus_1533#0 TATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCT 342
consensus_1533#1 TATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCT 360
************************************************************
consensus_1533#0 GCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCA 402
consensus_1533#1 GCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCA 420
************************************************************
consensus_1533#0 CAGGCTTACAGTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAA 462
consensus_1533#1 CAGGCT------GCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAA 474
****** ************************************************
consensus_1533#0 GCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCG 522
consensus_1533#1 GCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCG 534
************************************************************
consensus_1533#0 CAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATATCCCCCCCAGGGT 582
consensus_1533#1 CAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCAT-------------- 580
**********************************************
consensus_1533#0 GCTGGTTCCTACGGCCAGCCTCCA 606
consensus_1533#1 ------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |