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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence
[AGCGTGTAAGTAGGAGCACAGTACACAGACGGACAGAGAAATGGACAGAAATCTACAGCAACTGCAGTAACAAGTGCTGACTTGATTAAACACTGGTGATTCAGAGAGAAATAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAAGAAACAGAGCTTCTGGATGCCTGGGAATTACGTGCGCACGGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGAGAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAAGTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTTTACCTCCACTGAACGCTTAGCTGTTCTCCACTCCTCCATCTCCGACTCACTCGTAGCAGAGGAGGGAGACCGGGTGAGAGTCTGGCAGAAGGACACCTTTCCAAAGAAAATCTTCTGCGGCTTCAAAGAGAGCCACACCAACAACACCAGCTTCTCCCGTGCACAGAAACCCTGGAGCAAGAAGCTGCAGAAGCTGGAGAAGGTCAGGGCTGCATATCACAAGTCCTGTCAGCAGGAGCAGACGGCCCTCGACAGAGAGAAACAAGCCAACGAAGACGCT]
[+] EMBL BU805694 [AGCGTGTAAGTAGGAGCACAGTACACAGACGGACAGAGAAATGGACAGAAATCTACAGCAACTGCAGTAACAAGTGCTGACTTGATTAAACACTGGTGATTCAGAGAGAAATAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAAGAAACAGAGCTTCTGGATGCCTGGGAATTACGTGCACACGGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGAGAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAAGTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTTTACCTCCACTGAACGCTTAGCTGTTCTCCACTCCTCCATCTCCGACTCACTCGTAGCAGAGGAGGGAGACCGGGTGAGAGTCTGGCAGAAGGACACCTTTCCAAAGAAAATCTTCTGCGGCTTCAAAGAGAGCCACACCAACAACACCAGCTTCTCCCGTGCACAGAAACCCTGGAGCAAGAAGCTGCAGAAGCTGGAGAAGGTC ]
[+] EMBL BU804530 [ AGAGAAATGGACAGAAATCTACAGCAACTGCAGTAACAAGTGCTGACTTGATTAAACACTGGTGATTCAGAGAGAAATAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAAGAAACAGAGCTTCTGGATGCCTGGGAATTACGTGCGCACGGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGAGAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAAGTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTTTACCTCCACTGAACGCTTAGCTGTTCTCCACTCCTCCATCTCCGACTCACTCGTAGCAGAGGAGGGAGACCGGGTGAGAGTCTGGCAGAAGGACACCTTTCCAAAGAAAATCTTCTGCGGCTTCAAAGAGAGCCACACCAACAACACCAGCTTCTCCCGTGCACAGAAACCCTGGAGCAAGAAGCTGCAGAAGCTGGAGAAGGTCAGGGCTGCATATCACAAGTCCTGTCAGCAGGAGCAGACGGCCCTCGACAGAGAGAAACAAGCCAACGAAGACGCT]
consensusID : consensus_1540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[CAGAGGGGCACTCGGCCCCTTTCGGCTGGTTTTATAGCCTAATGGCAGGGTGAGAAGAACATGAGCGCGCCTGGTAAAGTGAAGGTCCGTGAGTAGAACGAGGAAGGGATCAAAGTAGAAGAGAGAAAGAAAAGTTCATCTGGGTACCAGGAAGAACATCACAGCTGGGGGGGAGGAGAACATGCAAGAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAAGAAACAGAGCTTCTGGATGGTGAGGATTATATTCACGATCTGTCTGGAGAAATCTTTCAAACTGGTATTCTCACACATTTATTAATATTGCCACTACTAGCCTGGGAATTACGTGCGCACGGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGAGAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAAGTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTTTACCTCCCCTGAACGCTTAGCTGTTCTCCACTCCTCC]
[+] EMBL BU805441 [CAGAGGGGCACTCGGCCCCTTTCGGCTGGTTTTATAGCCTAATGGCAGGGTGAGAAGAACATGAGCGCGCCTGGTAAAGTGAAGGTCCGTGAGTAGAACGAGGAAGGGATCAAAGTAGAAGAGAGAAAGAAAAGTTCATCTGGGTACCAGGAAGAACATCACAGCTGGGGGGGAGGAGAACATGCAAGAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAAGAAACAGAGCTTCTGGATGGTGAGGATTATATTCACGATCTGTCTGGAGAAATCTTTCAAACTGGTATTCTCACACATTTATTAATATTGCCACTACTAGCCTGGGAATTACGTGCGCACGGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGAGAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAAGTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTTTACCTCCCCTGAACGCTTAGCTGTTCTCCACTCCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1540#0 ------------------------------------------------------------
consensus_1540#1 CAGAGGGGCACTCGGCCCCTTTCGGCTGGTTTTATAGCCTAATGGCAGGGTGAGAAGAAC 60
consensus_1540#0 ---AGCGTGTA-AGTAGGAGCACAGTACACAGACGGACAGAGAAATGGACAGAAATCTAC 56
consensus_1540#1 ATGAGCGCGCCTGGTAAAGTGAAGGTCCGTGAGTAGAACGAGGAAGGGATCAAAGTAGAA 120
**** * *** * ** * ** *** ** *** ** * *
consensus_1540#0 AGCAACTGCAGTAA--CAAGTGCTGACTTGATTAAACA------CTGGTGATTCAGAGA- 107
consensus_1540#1 GAGAGAAAGAAAAGTTCATCTGGGTACCAGGAAGAACATCACAGCTGGGGGGGAGGAGAA 180
* * * ** ** ** * **** **** * ****
consensus_1540#0 ---GAAATAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAA 164
consensus_1540#1 CATGCAAGAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAA 240
* ** ****************************************************
consensus_1540#0 GAAACAGAGCTTCTGGATG----------------------------------------- 183
consensus_1540#1 GAAACAGAGCTTCTGGATGGTGAGGATTATATTCACGATCTGTCTGGAGAAATCTTTCAA 300
*******************
consensus_1540#0 ----------------------------------------CCTGGGAATTACGTGCGCAC 203
consensus_1540#1 ACTGGTATTCTCACACATTTATTAATATTGCCACTACTAGCCTGGGAATTACGTGCGCAC 360
********************
consensus_1540#0 GGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGA 263
consensus_1540#1 GGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGA 420
************************************************************
consensus_1540#0 GAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAA 323
consensus_1540#1 GAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAA 480
************************************************************
consensus_1540#0 GTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTT 383
consensus_1540#1 GTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTT 540
************************************************************
consensus_1540#0 TACCTCCACTGAACGCTTAGCTGTTCTCCACTCCTCCATCTCCGACTCACTCGTAGCAGA 443
consensus_1540#1 TACCTCCCCTGAACGCTTAGCTGTTCTCCACTCCTCC----------------------- 577
******* *****************************
consensus_1540#0 GGAGGGAGACCGGGTGAGAGTCTGGCAGAAGGACACCTTTCCAAAGAAAATCTTCTGCGG 503
consensus_1540#1 ------------------------------------------------------------
consensus_1540#0 CTTCAAAGAGAGCCACACCAACAACACCAGCTTCTCCCGTGCACAGAAACCCTGGAGCAA 563
consensus_1540#1 ------------------------------------------------------------
consensus_1540#0 GAAGCTGCAGAAGCTGGAGAAGGTCAGGGCTGCATATCACAAGTCCTGTCAGCAGGAGCA 623
consensus_1540#1 ------------------------------------------------------------
consensus_1540#0 GACGGCCCTCGACAGAGAGAAACAAGCCAACGAAGACGCT 663
consensus_1540#1 ----------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |