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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence
[AGAAGACAAACACGCACAAAAAAGTGGGAGTTTTGTCAGTTTTGGACGCACTAGAGGAGCCTGACAAGCATCTGGATGAGACGGTCCACCGATGCACCAATGACCTTCTACCCCGGGGAGCAACAACGTTCAGCTCTGTTAAAATGGCAGGAGACCAACGCAGCTAACTGGAGGACAAACAGCTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGAAATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTACGCCCCCGCCCCGACACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGTCCGAGGAGTCCATGAAGCTGAAGAAGGAGATCTCCCTGGTGAACGGGGTCTGTCTGATCGTGGGAAACATGATCGGTTCCGGAATCTTCGTCTCTCCCAAGGGCGTCCTCATGCACAGCGCCTCCTATGGCCTCTCGCTGGTCGTGTGGGCCATCGGGGGCATCTTCTCAGTCTTTGGTGCCCTGTGTTACGCCGAACTGGGCACCACCATCACCAAGTCTGGGGCGTCATACGCCTACATCCTGGAGGCCTTTGGAGGTTCCTCGCTTTCA]
[+] EMBL CA589823 [AGAAGACAAACACGCACAAAAAAGTGGGAGTTTTGTCAGTTTTGGACGCACTAGAGGAGCCTGACAAGCATCTGGATGAGACGGTCCACCGATGCACCAATGACCTTCTACCCCGGGGAGCAACAACGTTCAGCTCTGTTAAAATGGCAGGAGACCAACGCAGCTAACTGGAGGACAAACAGTTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGAAATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTACGCCCCCGCCCCGACACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGTCCGAGGAGTCCATGAAGCTGAAGAAGGAGATCTCCCTGGTGAACGGGGTCTGTCTGATCGTGGGAAACATGATCGGTTCCGGAATCTTCGTCTCTCCCAAGGGCGTCCTCATGCACAGCGCCTCCTATGGCCTCTCGCTGGTCGTGTGGGCCATCGGGGGCATCTTCTCAGTCTTTGGTGCCCTGTGTTACGCCGAACTGGGCACCACCATCACCAAGTCTGGGGCGTCATACGCCTACATCCTGGAGGCCTTTGGAGGTTCCTCGCTTTCA]
[+] EMBL FR0059220 [ GCAACTACGTTCAGCTCTGTTAAAATGGCAGGAGACCAACGCAGCTAACTGGAGGACACACACCTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGAAATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTACGCCCCCGCCCCGACACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGTCCGAGGAGTCCATGAAGCTGAAGAAGGAGATCTCC ]
consensusID : consensus_1544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[AACGCTCAGCTCTGTTAAAGCTAATGGTCCCCCAAACCGAACACCTCCCTCTCAAATCCAGCAATGGCAGGAGACCAACGCAGCTAACTGGAGGACAAACAGTTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGAAATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTACGCCCCCGCCCCGGCACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGGCCGAGGAGGCCATGAAGCTTAAGAAGGAGATCTCCCTGGTGAACCGGGCTTGGCTGATCGTGGGAAACA]
[+] EMBL FR0059943 [AACGCTCAGCTCTGTTAAAGCTAATGGTCCCCCAAACCGAACACCTCCCTCTCAAATCCAGCAATGGCAGGAGACCAACGCAGCTAACTGGAGGACAAACAGTTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGAAATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTACGCCCCCGCCCCGGCACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGGCCGAGGAGGCCATGAAGCTTAAGAAGGAGATCTCCCTGGTGAACCGGGCTTGGCTGATCGTGGGAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1544#0 AGAAGACAAACACGCACAAAAAAGTGGGAGTTTTGTCAGTTTTGGACGCACTAGAGGAGC 60
consensus_1544#1 ------------------------------------------------------------
consensus_1544#0 CTGACAAGCATCTGGATGAGACGGTCCACCGATGCACCAATGACCTTCTACCCCGGGGAG 120
consensus_1544#1 --------------AACGCTCAGCTCTGTTAAAGC--TAATGGTCCCCCAAACCGAACAC 44
* * * ** * ** **** * * * *** *
consensus_1544#0 CAACAACGTTCAGCTCTGTTAAAATGGCAGGAGACCAACGCAGCTAACTGGAGGACAAAC 180
consensus_1544#1 CTCC--CTCTCAAATCCAGCAA--TGGCAGGAGACCAACGCAGCTAACTGGAGGACAAAC 100
* * * *** ** ** ************************************
consensus_1544#0 AGCTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGA 240
consensus_1544#1 AGTTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGA 160
** *********************************************************
consensus_1544#0 AATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTAC 300
consensus_1544#1 AATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTAC 220
************************************************************
consensus_1544#0 GCCCCCGCCCCGACACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGTCC 360
consensus_1544#1 GCCCCCGCCCCGGCACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGGCC 280
************ ******************************************** **
consensus_1544#0 GAGGAGTCCATGAAGCTGAAGAAGGAGATCTCCCTGGTGAACGGGGTCTGTCTGATCGTG 420
consensus_1544#1 GAGGAGGCCATGAAGCTTAAGAAGGAGATCTCCCTGGTGAACCGGGCTTGGCTGATCGTG 340
****** ********** ************************ *** ** *********
consensus_1544#0 GGAAACATGATCGGTTCCGGAATCTTCGTCTCTCCCAAGGGCGTCCTCATGCACAGCGCC 480
consensus_1544#1 GGAAACA----------------------------------------------------- 347
*******
consensus_1544#0 TCCTATGGCCTCTCGCTGGTCGTGTGGGCCATCGGGGGCATCTTCTCAGTCTTTGGTGCC 540
consensus_1544#1 ------------------------------------------------------------
consensus_1544#0 CTGTGTTACGCCGAACTGGGCACCACCATCACCAAGTCTGGGGCGTCATACGCCTACATC 600
consensus_1544#1 ------------------------------------------------------------
consensus_1544#0 CTGGAGGCCTTTGGAGGTTCCTCGCTTTCA 630
consensus_1544#1 ------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |