These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence [AGAAGACAAACACGCACAAAAAAGTGGGAGTTTTGTCAGTTTTGGACGCACTAGAGGAGCCTGACAAGCATCTGGATGAGACGGTCCACCGATGCACCAATGACCTTCTACCCCGGGGAGCAACAACGTTCAGCTCTGTTAAAATGGCAGGAGACCAACGCAGCTAACTGGAGGACAAACAGCTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGAAATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTACGCCCCCGCCCCGACACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGTCCGAGGAGTCCATGAAGCTGAAGAAGGAGATCTCCCTGGTGAACGGGGTCTGTCTGATCGTGGGAAACATGATCGGTTCCGGAATCTTCGTCTCTCCCAAGGGCGTCCTCATGCACAGCGCCTCCTATGGCCTCTCGCTGGTCGTGTGGGCCATCGGGGGCATCTTCTCAGTCTTTGGTGCCCTGTGTTACGCCGAACTGGGCACCACCATCACCAAGTCTGGGGCGTCATACGCCTACATCCTGGAGGCCTTTGGAGGTTCCTCGCTTTCA] [+] EMBL CA589823 [AGAAGACAAACACGCACAAAAAAGTGGGAGTTTTGTCAGTTTTGGACGCACTAGAGGAGCCTGACAAGCATCTGGATGAGACGGTCCACCGATGCACCAATGACCTTCTACCCCGGGGAGCAACAACGTTCAGCTCTGTTAAAATGGCAGGAGACCAACGCAGCTAACTGGAGGACAAACAGTTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGAAATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTACGCCCCCGCCCCGACACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGTCCGAGGAGTCCATGAAGCTGAAGAAGGAGATCTCCCTGGTGAACGGGGTCTGTCTGATCGTGGGAAACATGATCGGTTCCGGAATCTTCGTCTCTCCCAAGGGCGTCCTCATGCACAGCGCCTCCTATGGCCTCTCGCTGGTCGTGTGGGCCATCGGGGGCATCTTCTCAGTCTTTGGTGCCCTGTGTTACGCCGAACTGGGCACCACCATCACCAAGTCTGGGGCGTCATACGCCTACATCCTGGAGGCCTTTGGAGGTTCCTCGCTTTCA] [+] EMBL FR0059220 [ GCAACTACGTTCAGCTCTGTTAAAATGGCAGGAGACCAACGCAGCTAACTGGAGGACACACACCTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGAAATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTACGCCCCCGCCCCGACACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGTCCGAGGAGTCCATGAAGCTGAAGAAGGAGATCTCC ] consensusID : consensus_1544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [AACGCTCAGCTCTGTTAAAGCTAATGGTCCCCCAAACCGAACACCTCCCTCTCAAATCCAGCAATGGCAGGAGACCAACGCAGCTAACTGGAGGACAAACAGTTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGAAATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTACGCCCCCGCCCCGGCACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGGCCGAGGAGGCCATGAAGCTTAAGAAGGAGATCTCCCTGGTGAACCGGGCTTGGCTGATCGTGGGAAACA] [+] EMBL FR0059943 [AACGCTCAGCTCTGTTAAAGCTAATGGTCCCCCAAACCGAACACCTCCCTCTCAAATCCAGCAATGGCAGGAGACCAACGCAGCTAACTGGAGGACAAACAGTTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGAAATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTACGCCCCCGCCCCGGCACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGGCCGAGGAGGCCATGAAGCTTAAGAAGGAGATCTCCCTGGTGAACCGGGCTTGGCTGATCGTGGGAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1544#0 AGAAGACAAACACGCACAAAAAAGTGGGAGTTTTGTCAGTTTTGGACGCACTAGAGGAGC 60 consensus_1544#1 ------------------------------------------------------------ consensus_1544#0 CTGACAAGCATCTGGATGAGACGGTCCACCGATGCACCAATGACCTTCTACCCCGGGGAG 120 consensus_1544#1 --------------AACGCTCAGCTCTGTTAAAGC--TAATGGTCCCCCAAACCGAACAC 44 * * * ** * ** **** * * * *** * consensus_1544#0 CAACAACGTTCAGCTCTGTTAAAATGGCAGGAGACCAACGCAGCTAACTGGAGGACAAAC 180 consensus_1544#1 CTCC--CTCTCAAATCCAGCAA--TGGCAGGAGACCAACGCAGCTAACTGGAGGACAAAC 100 * * * *** ** ** ************************************ consensus_1544#0 AGCTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGA 240 consensus_1544#1 AGTTGACTTTGAAGGATAAAATTCCCACTTTGAAGGATAAAGTTCCCACTTTTTGCCTGA 160 ** ********************************************************* consensus_1544#0 AATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTAC 300 consensus_1544#1 AATCTTGTTTGGGAGACTCTGCCTAAATATCCTGACTTTGCTTGAACGATGGCTTCCTAC 220 ************************************************************ consensus_1544#0 GCCCCCGCCCCGACACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGTCC 360 consensus_1544#1 GCCCCCGCCCCGGCACAAGAGGAGCCCGACAGGGGCTCGACATCGAAGTCCGAAGGGGCC 280 ************ ******************************************** ** consensus_1544#0 GAGGAGTCCATGAAGCTGAAGAAGGAGATCTCCCTGGTGAACGGGGTCTGTCTGATCGTG 420 consensus_1544#1 GAGGAGGCCATGAAGCTTAAGAAGGAGATCTCCCTGGTGAACCGGGCTTGGCTGATCGTG 340 ****** ********** ************************ *** ** ********* consensus_1544#0 GGAAACATGATCGGTTCCGGAATCTTCGTCTCTCCCAAGGGCGTCCTCATGCACAGCGCC 480 consensus_1544#1 GGAAACA----------------------------------------------------- 347 ******* consensus_1544#0 TCCTATGGCCTCTCGCTGGTCGTGTGGGCCATCGGGGGCATCTTCTCAGTCTTTGGTGCC 540 consensus_1544#1 ------------------------------------------------------------ consensus_1544#0 CTGTGTTACGCCGAACTGGGCACCACCATCACCAAGTCTGGGGCGTCATACGCCTACATC 600 consensus_1544#1 ------------------------------------------------------------ consensus_1544#0 CTGGAGGCCTTTGGAGGTTCCTCGCTTTCA 630 consensus_1544#1 ------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |