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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[ATAATATACTGCTGTTTTAGACTGATAGTGTGAATATTTTAATCAGACGCTACGCGGCTTTGGGTGCATCATGAGGCTGGAGCGTCCCGCCCTGCTCTGCCTGGCAGCAGCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCTCCTGTCATCTCATCTGCACACATGTGGACCAAACTGATCCTGACCCACCACTGGCCCGTGACCTTCTGTAGCGTTGAACACTGCCGTGCCAACTTTAGCTACTGGACTCTCCACGGACTTTGGCCAGATAAAGGGATCAACTGTAATTCTTCGTGGCATTTCAACAGTTCTCTTATTGAGGACCTGCTTCCAGACATGGAGAGAAGTTGGCCGGACTTGCTTGAACCAACATCTGCCAGATTCTGGAAATACGAGTGGTTCAAACATGGCACATGTGCTGCACAAGCATCTTCTCTGAACACTCAGCATAAATACTTCAGCAAAGCTCTGGAGCTCTACCATAAAGTGGACCTGGACGGCATCCTGAAGAAGTTCGGCATCAGGCCTTCAGAGGAGCAGTATTCGCTCTCACAGATTGAAGGAGTCATTGAGAACTTCTATGGCACCACCCCCAAGATCCAGTGTGTCCAT]
[+] EMBL CA330011 [ATAATATACTGCTGTTTTAGACTGATAGTGTGAATATTTTAATCAGACGCTACGCGGCTTTGGGTGCATCATGAGGCTGGAGCGTCCCGCCCTGCTCTGCCTGGCAGCAGCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCTCCTGTCATCTCATCTGCACACATGTGGACCAAACTGATCCTGACCCACCACTGGCCCGTGACCTTCTGTAGCGTTGAACACTGCCGTGCCAACTTTAGCTACTGGACTCTCCACGGACTTTGGCCAGATAAAGGGATCAACTGTAATTCTTCGTGGCATTTCAACAGTTCTCTTATTGAGGACCTGCTTCCAGACATGGAGAGAAGTTGGCCGGACTTGCTTGAACCAACATCTGCCAGATTCTGGAAATACGAGTGGTTCAAACATGGCACATGTGCTGCACAAGCATCTTCTCTGAACACTCAGCATAAATACTTCAGCAAAGCTCTGGAGCTCTACCATAAAGTGGACCTGGACGGCATCCTGAAGAAGTTCGGCATCAGGCCTTCAGAGGAGCAGTATTCGCTCTCACAGATTGAAGGAGTCATTGAGAACTTCTATGGCACCACCCCCAAGATCCAGTGTGTCCAT]
consensusID : consensus_1554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[TTTAATCAGACGCTACGCGGCTTTGGGTGCATCATGAGGCTGGAGCGTCCCGCCCTGCTCTGCCTGGCAGCAGCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCTCCTGTCATCTCATCTGCGTAAGTGTGGCTGAGGGACACCAGGGAGATGATTGTGTGACTCTCCAGGAGAGGATGGAGGGACACATCGTTGAGGACAACGCTGTTTCATGGAGGCGTTTGTGGAACTGCACTTTATAATTTGTGCTTTTTGTAGACACATGTGGACCAAACTGATCCTGACCCACCACTGGCCCGTGACCTTCTGTAGCGTGAGTTTCCTTCTGGGCTTCATCATGGTCTGCTTTGC]
[+] EMBL FR0060364 [TTTAATCAGACGCTACGCGGCTTTGGGTGCATCATGAGGCTGGAGCGTCCCGCCCTGCTCTGCCTGGCAGCAGCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCTCCTGTCATCTCATCTGCGTAAGTGTGGCTGAGGGACACCAGGGAGATGATTGTGTGACTCTCCAGGAGAGGATGGAGGGACACATCGTTGAGGACAACGCTGTTTCATGGAGGCGTTTGTGGAACTGCACTTTATAATTTGTGCTTTTTGTAGACACATGTGGACCAAACTGATCCTGACCCACCACTGGCCCGTGACCTTCTGTAGCGTGAGTTTCCTTCTGGGCTTCATCATGGTCTGCTTTGC]
consensusID : consensus_1554#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence
[TTTAATCAGACGCTACGCGGCTTTGGGTGCATCATGAGGCTGGAGCGTCCCGCCCTGCTCTGCCTGGCAGCAGCCTGGTCCTGGTCCTGGGCCTGGACCTGGTCTCCTGTCATCTCATCTGCACACATGTGGACCAAACTGATCCTGACCCACCACTGGCCCGTGACCTTCTGTAGCGTGAGTTTCCTTCTGGGCTTCATCATGTTCTGCTTTGCTGCATCAGCAGCCCCGGGACAGTGTTGGGCCAGTAACTCGGTGAAAGATATTAGCCTGGAAACGAGGAAGCGGAATCAGTAATAGAAACCATAACGGGCCGGTTCATTAACC]
[+] EMBL FR0060556 [TTTAATCAGACGCTACGCGGCTTTGGGTGCATCATGAGGCTGGAGCGTCCCGCCCTGCTCTGCCTGGCAGCAGCCTGGTCCTGGTCCTGGGCCTGGACCTGGTCTCCTGTCATCTCATCTGCACACATGTGGACCAAACTGATCCTGACCCACCACTGGCCCGTGACCTTCTGTAGCGTGAGTTTCCTTCTGGGCTTCATCATGTTCTGCTTTGCTGCATCAGCAGCCCCGGGACAGTGTTGGGCCAGTAACTCGGTGAAAGATATTAGCCTGGAAACGAGGAAGCGGAATCAGTAATAGAAACCATAACGGGCCGGTTCATTAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1554#0 ATAATATACTGCTGTTTTAGACTGATAGTGTGAATATTTTAATCAGACGCTACGCGGCTT 60
consensus_1554#2 -------------------------------------TTTAATCAGACGCTACGCGGCTT 23
consensus_1554#1 -------------------------------------TTTAATCAGACGCTACGCGGCTT 23
***********************
consensus_1554#0 TGGGTGCATCATGAGGCTGGAGCGTCCCGCCCTGCTCTGCCTGGCAGCAGCCTGGTCCTG 120
consensus_1554#2 TGGGTGCATCATGAGGCTGGAGCGTCCCGCCCTGCTCTGCCTGGCAGCAGCCTGGTCCTG 83
consensus_1554#1 TGGGTGCATCATGAGGCTGGAGCGTCCCGCCCTGCTCTGCCTGGCAGCAGCCTGGTCCTG 83
************************************************************
consensus_1554#0 GTCCTGGTCCTGGTCCTGGTCTCCTGTCATCTCATCTGCACACATGTGGACCAAACTGAT 180
consensus_1554#2 GTCCTGGGCCTGGACCTGGTCTCCTGTCATCTCATCTGCACACATGTGGACCAAACTGAT 143
consensus_1554#1 GTCCTGGTCCTGGTCCTGGTCTCCTGTCATCTCATCTGCGTAAGTGTGG-CTGAGGGACA 142
******* ***** ************************* * ***** * *
consensus_1554#0 CCTGACCCACCACTGGCCCGTGACCTTCTG--------TAGCGTTGAACACTGCCGTGC- 231
consensus_1554#2 CCTGACCCACCACTGGCCCGTGACCTTCTG--------TAGCGTGAGTTTCCTTCTGGG- 194
consensus_1554#1 CCAGGGAGATGATTG---TGTGACTCTCCAGGAGAGGATGGAGGGACACATCGTTGAGGA 199
** * * * ** ***** ** * * * *
consensus_1554#0 CAACTTTAGCTACTGGA-CTCTCCACGGACTTTGGCCAGATAAAGGGATCAACT-GTAAT 289
consensus_1554#2 CTTCATCATGTTCTGC--TTTGCTGCATCAGCAGCCCCGGGACAGTGTTGGGCCAGTAAC 252
consensus_1554#1 CAACGCTGTTTCATGGAGGCGTTTGTGGAACTGCACTTTATAATTTGTGCTTTTTGTAGA 259
* * * ** * * * ***
consensus_1554#0 TCTTCGTGG--CATTTCAACAGTTCTCTTATTGAGGACCTGCTTCCAGACATGGAGA--G 345
consensus_1554#2 TCGGTGAAA--GATATTAGC----CTGGAAACGAGGAAGCGGAATCAGTAATAGAAACCA 306
consensus_1554#1 CACATGTGGACCAAACTGATC-CTGACCCACCACTGGCCCGTGACCTTCTGTAGCGTGAG 318
* * * * * * * *
consensus_1554#0 AAGTTGGCCGGACTTGCTTGAACCAACATCTGCCAGATTCTGGAAATACGAGTGGTTCAA 405
consensus_1554#2 TAACGGGCCGG---TTCATTAACC------------------------------------ 327
consensus_1554#1 TTTCCTTCTGGGCTTCATCATGGTCTGCTTTGC--------------------------- 351
* ** *
consensus_1554#0 ACATGGCACATGTGCTGCACAAGCATCTTCTCTGAACACTCAGCATAAATACTTCAGCAA 465
consensus_1554#2 ------------------------------------------------------------
consensus_1554#1 ------------------------------------------------------------
consensus_1554#0 AGCTCTGGAGCTCTACCATAAAGTGGACCTGGACGGCATCCTGAAGAAGTTCGGCATCAG 525
consensus_1554#2 ------------------------------------------------------------
consensus_1554#1 ------------------------------------------------------------
consensus_1554#0 GCCTTCAGAGGAGCAGTATTCGCTCTCACAGATTGAAGGAGTCATTGAGAACTTCTATGG 585
consensus_1554#2 ------------------------------------------------------------
consensus_1554#1 ------------------------------------------------------------
consensus_1554#0 CACCACCCCCAAGATCCAGTGTGTCCAT 613
consensus_1554#2 ----------------------------
consensus_1554#1 ----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |