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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence
[TTACTTTCTCAACCAGGAAGATGGGTGTGTGGTCGAATAAATGGGCCATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAAATAACAATGCACCACAGTACCCGCTGTGTGCTATGCAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCAGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTCAATGTCACATCCAAGGG]
[+] EMBL CA590981 [TTACTTTCTCAACCAGGAAGATGGGTGTGTGGTCGAATAAATGGGCCATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAAATAACAATGCACCACAGTACCCGCTG ]
[+] EMBL CA591538 [ GGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAAATAACAATGCACCACAGTACCCGCTGTGTGCTATGCAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCAGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTCAATGTCACATCCAAGGG]
consensusID : consensus_1556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence
[TTCCTTACTCACCAGGAAGATGGGTGTGTGGTCGAATAAATGCCCTATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTAAGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCGGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTC]
[+] EMBL CA588110 [TTCCTTACTCACCAGGAAGATGGGTGTGTGGTCGAATAAATGCCCTATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTAAGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCGGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1556#0 TTACTTTCTCAACCAGGAAGATGGGTGTGTGGTCGAATAAATGGGCCATTATTTTGGTAG 60
consensus_1556#1 TTCCTTACTCA-CCAGGAAGATGGGTGTGTGGTCGAATAAATGCCCTATTATTTTGGTAG 59
** *** **** ******************************* * *************
consensus_1556#0 TTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATC 120
consensus_1556#1 TTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATC 119
************************************************************
consensus_1556#0 TTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGT 180
consensus_1556#1 TTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGT 179
************************************************************
consensus_1556#0 CCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAAT 240
consensus_1556#1 CCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAAT 239
************************************************************
consensus_1556#0 GGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTA 300
consensus_1556#1 GGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTA 299
************************************************************
consensus_1556#0 CCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTG 360
consensus_1556#1 CCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTG 359
************************************************************
consensus_1556#0 TGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGA 420
consensus_1556#1 TGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGA 419
************************************************************
consensus_1556#0 ACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTT 480
consensus_1556#1 ACACGGGTGTGTATGTAGAGGACTAAGATCCAGCTTTTGCCCATTGTAATGTAACAGTTT 479
************************* **********************************
consensus_1556#0 GGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGA 540
consensus_1556#1 GGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGA 539
************************************************************
consensus_1556#0 AGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAA 600
consensus_1556#1 AGGATGACAATGAAACCCAGTTGATACGACAG---------------------------- 571
********************************
consensus_1556#0 ATAACAATGCACCACAGTACCCGCTGTGTGCTATGCAGATGTACTCCCACATGTCTGCTG 660
consensus_1556#1 --------------------------------------ATGTACTCCCACATGTCTGCTG 593
**********************
consensus_1556#0 TCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCAG 720
consensus_1556#1 TCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCGG 653
********************************************************** *
consensus_1556#0 AGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTCAATG 780
consensus_1556#1 AGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTC---- 709
********************************************************
consensus_1556#0 TCACATCCAAGGG 793
consensus_1556#1 -------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |