These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [TTACTTTCTCAACCAGGAAGATGGGTGTGTGGTCGAATAAATGGGCCATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAAATAACAATGCACCACAGTACCCGCTGTGTGCTATGCAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCAGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTCAATGTCACATCCAAGGG] [+] EMBL CA590981 [TTACTTTCTCAACCAGGAAGATGGGTGTGTGGTCGAATAAATGGGCCATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAAATAACAATGCACCACAGTACCCGCTG ] [+] EMBL CA591538 [ GGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAAATAACAATGCACCACAGTACCCGCTGTGTGCTATGCAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCAGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTCAATGTCACATCCAAGGG] consensusID : consensus_1556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence [TTCCTTACTCACCAGGAAGATGGGTGTGTGGTCGAATAAATGCCCTATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTAAGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCGGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTC] [+] EMBL CA588110 [TTCCTTACTCACCAGGAAGATGGGTGTGTGGTCGAATAAATGCCCTATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTAAGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCGGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1556#0 TTACTTTCTCAACCAGGAAGATGGGTGTGTGGTCGAATAAATGGGCCATTATTTTGGTAG 60 consensus_1556#1 TTCCTTACTCA-CCAGGAAGATGGGTGTGTGGTCGAATAAATGCCCTATTATTTTGGTAG 59 ** *** **** ******************************* * ************* consensus_1556#0 TTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATC 120 consensus_1556#1 TTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATC 119 ************************************************************ consensus_1556#0 TTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGT 180 consensus_1556#1 TTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGT 179 ************************************************************ consensus_1556#0 CCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAAT 240 consensus_1556#1 CCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAAT 239 ************************************************************ consensus_1556#0 GGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTA 300 consensus_1556#1 GGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTA 299 ************************************************************ consensus_1556#0 CCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTG 360 consensus_1556#1 CCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTG 359 ************************************************************ consensus_1556#0 TGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGA 420 consensus_1556#1 TGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGA 419 ************************************************************ consensus_1556#0 ACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTT 480 consensus_1556#1 ACACGGGTGTGTATGTAGAGGACTAAGATCCAGCTTTTGCCCATTGTAATGTAACAGTTT 479 ************************* ********************************** consensus_1556#0 GGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGA 540 consensus_1556#1 GGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGA 539 ************************************************************ consensus_1556#0 AGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAA 600 consensus_1556#1 AGGATGACAATGAAACCCAGTTGATACGACAG---------------------------- 571 ******************************** consensus_1556#0 ATAACAATGCACCACAGTACCCGCTGTGTGCTATGCAGATGTACTCCCACATGTCTGCTG 660 consensus_1556#1 --------------------------------------ATGTACTCCCACATGTCTGCTG 593 ********************** consensus_1556#0 TCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCAG 720 consensus_1556#1 TCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCGG 653 ********************************************************** * consensus_1556#0 AGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTCAATG 780 consensus_1556#1 AGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTC---- 709 ******************************************************** consensus_1556#0 TCACATCCAAGGG 793 consensus_1556#1 ------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |