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Takifugu rubripes
cluster # 1556 cluster # 1556       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1556#0 length = 793 sequences # 2  
consensus_1556#1 length = 709 sequences # 1  

consensusID : consensus_1556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 793
fasta sequence
                              [TTACTTTCTCAACCAGGAAGATGGGTGTGTGGTCGAATAAATGGGCCATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAAATAACAATGCACCACAGTACCCGCTGTGTGCTATGCAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCAGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTCAATGTCACATCCAAGGG]

[+] EMBL CA590981             [TTACTTTCTCAACCAGGAAGATGGGTGTGTGGTCGAATAAATGGGCCATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAAATAACAATGCACCACAGTACCCGCTG                                                                                                                                                                       ]
[+] EMBL CA591538             [                                                                                                                                                                                                                                  GGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAAATAACAATGCACCACAGTACCCGCTGTGTGCTATGCAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCAGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTCAATGTCACATCCAAGGG]


>consensus_1556#0 TTACTTTCTCAACCAGGAAGATGGGTGTGTGGTCGAATAAATGGGCCATTATTTTGGTAG TTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATC TTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGT CCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAAT GGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTA CCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTG TGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGA ACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTT GGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGA AGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAA ATAACAATGCACCACAGTACCCGCTGTGTGCTATGCAGATGTACTCCCACATGTCTGCTG TCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCAG AGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTCAATG TCACATCCAAGGG



consensusID : consensus_1556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 709
fasta sequence
                              [TTCCTTACTCACCAGGAAGATGGGTGTGTGGTCGAATAAATGCCCTATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTAAGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCGGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTC]

[+] EMBL CA588110             [TTCCTTACTCACCAGGAAGATGGGTGTGTGGTCGAATAAATGCCCTATTATTTTGGTAGTTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCTTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATGGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTACCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGTGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAACACGGGTGTGTATGTAGAGGACTAAGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTGGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAAGGATGACAATGAAACCCAGTTGATACGACAGATGTACTCCCACATGTCTGCTGTCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCGGAGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTC]


>consensus_1556#1 TTCCTTACTCACCAGGAAGATGGGTGTGTGGTCGAATAAATGCCCTATTATTTTGGTAGT TGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATCT TAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGTC CTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAATG GGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTAC CAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTGT GGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGAA CACGGGTGTGTATGTAGAGGACTAAGATCCAGCTTTTGCCCATTGTAATGTAACAGTTTG GAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGAA GGATGACAATGAAACCCAGTTGATACGACAGATGTACTCCCACATGTCTGCTGTCACTGA CACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCGGAGATGGT TTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1556#0      TTACTTTCTCAACCAGGAAGATGGGTGTGTGGTCGAATAAATGGGCCATTATTTTGGTAG 60
consensus_1556#1      TTCCTTACTCA-CCAGGAAGATGGGTGTGTGGTCGAATAAATGCCCTATTATTTTGGTAG 59
                      ** *** **** *******************************  * *************

consensus_1556#0      TTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATC 120
consensus_1556#1      TTGGATGCGTATCCATTGGAATCAGCTCTAATTCAGTGGAAAAGAAGATTTATGTGAATC 119
                      ************************************************************

consensus_1556#0      TTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGT 180
consensus_1556#1      TTAATTACACTATCCCCTGTGTGCGGCTGCTCAATGCAACCCATCAAATAGGCTGCCAGT 179
                      ************************************************************

consensus_1556#0      CCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAAT 240
consensus_1556#1      CCTCTTTGTCAGGAAATGTTGGCGTGCTCCATGTGCTGGACTCAGAGGATAATCTTGAAT 239
                      ************************************************************

consensus_1556#0      GGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTA 300
consensus_1556#1      GGGTTCTGAATTCTGGTCCCAATCCTCCTTACCTGGTTATCCTGGATTACCTACTCTTTA 299
                      ************************************************************

consensus_1556#0      CCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTG 360
consensus_1556#1      CCAGAGCTGTCATGATGAAGTTGAAGAATGGCTCGAACAGAGTGGCAGGTGTAGCAGTTG 359
                      ************************************************************

consensus_1556#0      TGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGA 420
consensus_1556#1      TGGCACCAACTATAAATCCATCCACGGGCTTCTCCCCGCACACGACCTGTCCCAATGAGA 419
                      ************************************************************

consensus_1556#0      ACACGGGTGTGTATGTAGAGGACTATGATCCAGCTTTTGCCCATTGTAATGTAACAGTTT 480
consensus_1556#1      ACACGGGTGTGTATGTAGAGGACTAAGATCCAGCTTTTGCCCATTGTAATGTAACAGTTT 479
                      ************************* **********************************

consensus_1556#0      GGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGA 540
consensus_1556#1      GGAACCCTTTGGGAAACGGTTTGTCCTATGAGCAATTTAACTTCCCGATCTTTTCTCTGA 539
                      ************************************************************

consensus_1556#0      AGGATGACAATGAAACCCAGTTGATACGACAGTGTTACATCAATCATAATCTTGCAGTAA 600
consensus_1556#1      AGGATGACAATGAAACCCAGTTGATACGACAG---------------------------- 571
                      ********************************                            

consensus_1556#0      ATAACAATGCACCACAGTACCCGCTGTGTGCTATGCAGATGTACTCCCACATGTCTGCTG 660
consensus_1556#1      --------------------------------------ATGTACTCCCACATGTCTGCTG 593
                                                            **********************

consensus_1556#0      TCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCAG 720
consensus_1556#1      TCACTGACACCAGCACCTGCATGAGGAGAAGTGATAAAAACAGCTTCAGCATCAGCCCGG 653
                      ********************************************************** *

consensus_1556#0      AGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTCAATG 780
consensus_1556#1      AGATGGTTTGTGATCCACTGGGTGACTTTAATGTTTGGGCCGCCACCAGGCCTCTC---- 709
                      ********************************************************    

consensus_1556#0      TCACATCCAAGGG 793
consensus_1556#1      -------------
                                   




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)