These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [GTCGCAGTCGTTCTGTATCACCTCGAGGACCCTGGTTCCACTAAATACGACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTAAGTAGTTGTCCTCATATCCATCTTGATGAAGGAATTATATTTATTCTTTGCACGATTTCTCTGTCTCTTCAGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGT] [+] EMBL CA590331 [GTCGCAGTCGTTCTGTATCACCTCGAGGACCCTGGTTCCACTAAATACGACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTAAGTAGTTGTCCTCATATCCATCTTGATGAAGGAATTATATTTATTCTTTGCACGATTTCTCTGTCTCTTCAGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGT] consensusID : consensus_1561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGTTTACAGACCAGGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCC] [+] EMBL CA329961 [CAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGTTTACAGACCAGGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCC] consensusID : consensus_1561#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [TAATACATGTCAACAGAACAGTAGTAGAGTTACCTGGAAGTGTTTTAAAGGGAACTAAATCTGGCACACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACTTTTGTGTTCCAGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCCATGGTTTCAAACACTCTGCTGCAGCCCGAGAATAAGACAGAGATCTTGTTTGAGTGAACATCTCCTTCC] [-] EMBL CA846538 [TAATACATGTCAACAGAACAGTAGTAGAGTTACCTGGAAGTGTTTTAAAGGGAACTAAATCTGGCACACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACTTTTGTGTTCCAGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCCATGGTTTCAAACACTCTGCTGCAGCCCGAGAATAAGACAGAGATCTTGTTTGAGTGAACATCTCCTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1561#0 --------------GTCGCAGTCGTTCTGTATCACCTCGAGGACCCTGGTTCCACTAAAT 46 consensus_1561#1 ------------------------------------------------------------ consensus_1561#2 TAATACATGTCAACAGAACAGTAGTAGAGTTACCTGGAAGTGTTTTAAAGGGAACTAAAT 60 consensus_1561#0 ACG----ACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAAC 102 consensus_1561#1 -----------------------------------------------CAGGGAGGAAAAC 13 consensus_1561#2 CTGGCACACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAAC 120 ************* consensus_1561#0 AAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTG 162 consensus_1561#1 AAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTG 73 consensus_1561#2 AAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTG 180 ************************************************************ consensus_1561#0 CTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAG 222 consensus_1561#1 CTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAG 133 consensus_1561#2 CTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACTTTTG-- 238 ***************************************************** **** consensus_1561#0 GAGGAGACGTACAAAAACGTGGTAAGTAGTTGTCCTCATATCCATCTTGATGAAGGAATT 282 consensus_1561#1 GAGGAGACGTACAAAAACGTGGT------------------------------------- 156 consensus_1561#2 -------TGTTCCAGCGTTTTGT------------------------------------- 254 ** * * * ** consensus_1561#0 ATATTTATTCTTTGCACGATTTCTCTGTCTCTTCAGGTGCAGGAAGTGGTGGACTTTGAA 342 consensus_1561#1 --------------------------------------GCAGGAAGTGGTGGACTTTGAA 178 consensus_1561#2 ----------------------------------------------TGGTAGAC------ 262 **** *** consensus_1561#0 AAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGA 402 consensus_1561#1 AAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGA 238 consensus_1561#2 AGGCAGGAGAGTCGACCTGCTGAGT----GGCTCGCCAGGAAGTTCTTCTGTGCTCTGTC 318 * ** ** ****** * ** ** * * ** * *** * consensus_1561#0 ACCACCAGAGCCAAAGTCGGGG-CTGACGGATTCATCCGTGTCGATCATGACTATGTACT 461 consensus_1561#1 ACCACCAGAGCCAAAGTCGGGG-CTGACGGATTCATCCGTGTCGATCATGACTATGTACT 297 consensus_1561#2 AACACTGGGTTCCAATTCCATGTCTGTTCCAATC-CAAATGGTGGTCAAAGCCATGGTTT 377 * *** * * ** ** * *** * ** ** * *** * *** * consensus_1561#0 TAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAG 521 consensus_1561#1 TAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAG 357 consensus_1561#2 CAAACACTCTGCTGCAGCCCGAGAATAAGACAGAGATCTTGTTTGAGTGAACATCTCCTT 437 *** * * *** * ** * * * * ** * **** consensus_1561#0 AGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGA 581 consensus_1561#1 AGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGA 417 consensus_1561#2 CC---------------------------------------------------------- 439 consensus_1561#0 GATCGAAGCGCTTGGTTTTGACAGATTTGCCGT--------------------------- 614 consensus_1561#1 GATCGAAGCGCTTGGTTTTGACAGATTTGCCGTTTACAGACCAGGCGTTTTGTTGGTAGA 477 consensus_1561#2 ------------------------------------------------------------ consensus_1561#0 ------------------------------------------------------------ consensus_1561#1 CAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAAC 537 consensus_1561#2 ------------------------------------------------------------ consensus_1561#0 ------------------------------------------------- consensus_1561#1 ACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCC 586 consensus_1561#2 ------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |