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Takifugu rubripes
cluster # 1561 cluster # 1561       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1561#0 length = 614 sequences # 1  
consensus_1561#1 length = 586 sequences # 1  
consensus_1561#2 length = 439 sequences # 1  

consensusID : consensus_1561#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence
                              [GTCGCAGTCGTTCTGTATCACCTCGAGGACCCTGGTTCCACTAAATACGACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTAAGTAGTTGTCCTCATATCCATCTTGATGAAGGAATTATATTTATTCTTTGCACGATTTCTCTGTCTCTTCAGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGT]

[+] EMBL CA590331             [GTCGCAGTCGTTCTGTATCACCTCGAGGACCCTGGTTCCACTAAATACGACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTAAGTAGTTGTCCTCATATCCATCTTGATGAAGGAATTATATTTATTCTTTGCACGATTTCTCTGTCTCTTCAGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGT]


>consensus_1561#0 GTCGCAGTCGTTCTGTATCACCTCGAGGACCCTGGTTCCACTAAATACGACAGCATGGCA GAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTC GGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTC TCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAAC GTGGTAAGTAGTTGTCCTCATATCCATCTTGATGAAGGAATTATATTTATTCTTTGCACG ATTTCTCTGTCTCTTCAGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCT GCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTC GGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCC AAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGC AGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTT GACAGATTTGCCGT



consensusID : consensus_1561#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [CAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGTTTACAGACCAGGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCC]

[+] EMBL CA329961             [CAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGTTTACAGACCAGGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCC]


>consensus_1561#1 CAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCT GCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAA GCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTGCAGGAAGTGGTGGACTTTGAAAA GCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAAC CACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAA ATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGG AGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGAT CGAAGCGCTTGGTTTTGACAGATTTGCCGTTTACAGACCAGGCGTTTTGTTGGTAGACAG GCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACT GGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCC



consensusID : consensus_1561#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence
                              [TAATACATGTCAACAGAACAGTAGTAGAGTTACCTGGAAGTGTTTTAAAGGGAACTAAATCTGGCACACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACTTTTGTGTTCCAGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCCATGGTTTCAAACACTCTGCTGCAGCCCGAGAATAAGACAGAGATCTTGTTTGAGTGAACATCTCCTTCC]

[-] EMBL CA846538             [TAATACATGTCAACAGAACAGTAGTAGAGTTACCTGGAAGTGTTTTAAAGGGAACTAAATCTGGCACACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACTTTTGTGTTCCAGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCCATGGTTTCAAACACTCTGCTGCAGCCCGAGAATAAGACAGAGATCTTGTTTGAGTGAACATCTCCTTCC]


>consensus_1561#2 TAATACATGTCAACAGAACAGTAGTAGAGTTACCTGGAAGTGTTTTAAAGGGAACTAAAT CTGGCACACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAAC AAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTG CTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACTTTTGTG TTCCAGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAA GTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGT GGTCAAAGCCATGGTTTCAAACACTCTGCTGCAGCCCGAGAATAAGACAGAGATCTTGTT TGAGTGAACATCTCCTTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1561#0      --------------GTCGCAGTCGTTCTGTATCACCTCGAGGACCCTGGTTCCACTAAAT 46
consensus_1561#1      ------------------------------------------------------------
consensus_1561#2      TAATACATGTCAACAGAACAGTAGTAGAGTTACCTGGAAGTGTTTTAAAGGGAACTAAAT 60
                                                                                  

consensus_1561#0      ACG----ACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAAC 102
consensus_1561#1      -----------------------------------------------CAGGGAGGAAAAC 13
consensus_1561#2      CTGGCACACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAAC 120
                                                                     *************

consensus_1561#0      AAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTG 162
consensus_1561#1      AAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTG 73
consensus_1561#2      AAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTG 180
                      ************************************************************

consensus_1561#0      CTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAG 222
consensus_1561#1      CTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAG 133
consensus_1561#2      CTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACTTTTG-- 238
                      ***************************************************** ****  

consensus_1561#0      GAGGAGACGTACAAAAACGTGGTAAGTAGTTGTCCTCATATCCATCTTGATGAAGGAATT 282
consensus_1561#1      GAGGAGACGTACAAAAACGTGGT------------------------------------- 156
consensus_1561#2      -------TGTTCCAGCGTTTTGT------------------------------------- 254
                              ** * *     * **                                     

consensus_1561#0      ATATTTATTCTTTGCACGATTTCTCTGTCTCTTCAGGTGCAGGAAGTGGTGGACTTTGAA 342
consensus_1561#1      --------------------------------------GCAGGAAGTGGTGGACTTTGAA 178
consensus_1561#2      ----------------------------------------------TGGTAGAC------ 262
                                                                    **** ***      

consensus_1561#0      AAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGA 402
consensus_1561#1      AAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGA 238
consensus_1561#2      AGGCAGGAGAGTCGACCTGCTGAGT----GGCTCGCCAGGAAGTTCTTCTGTGCTCTGTC 318
                      * **  **        ******  *    ** **   * * **    *   ***   *  

consensus_1561#0      ACCACCAGAGCCAAAGTCGGGG-CTGACGGATTCATCCGTGTCGATCATGACTATGTACT 461
consensus_1561#1      ACCACCAGAGCCAAAGTCGGGG-CTGACGGATTCATCCGTGTCGATCATGACTATGTACT 297
consensus_1561#2      AACACTGGGTTCCAATTCCATGTCTGTTCCAATC-CAAATGGTGGTCAAAGCCATGGTTT 377
                      * ***  *   * ** **   * ***    * **     **  * ***   * ***   *

consensus_1561#0      TAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAG 521
consensus_1561#1      TAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAG 357
consensus_1561#2      CAAACACTCTGCTGCAGCCCGAGAATAAGACAGAGATCTTGTTTGAGTGAACATCTCCTT 437
                       ***    * *     ***     *  ** * *    *   *     ** *   ****  

consensus_1561#0      AGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGA 581
consensus_1561#1      AGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGA 417
consensus_1561#2      CC---------------------------------------------------------- 439
                                                                                  

consensus_1561#0      GATCGAAGCGCTTGGTTTTGACAGATTTGCCGT--------------------------- 614
consensus_1561#1      GATCGAAGCGCTTGGTTTTGACAGATTTGCCGTTTACAGACCAGGCGTTTTGTTGGTAGA 477
consensus_1561#2      ------------------------------------------------------------
                                                                                  

consensus_1561#0      ------------------------------------------------------------
consensus_1561#1      CAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAAC 537
consensus_1561#2      ------------------------------------------------------------
                                                                                  

consensus_1561#0      -------------------------------------------------
consensus_1561#1      ACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCC 586
consensus_1561#2      -------------------------------------------------
                                                                       




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)