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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[GTCGCAGTCGTTCTGTATCACCTCGAGGACCCTGGTTCCACTAAATACGACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTAAGTAGTTGTCCTCATATCCATCTTGATGAAGGAATTATATTTATTCTTTGCACGATTTCTCTGTCTCTTCAGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGT]
[+] EMBL CA590331 [GTCGCAGTCGTTCTGTATCACCTCGAGGACCCTGGTTCCACTAAATACGACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTAAGTAGTTGTCCTCATATCCATCTTGATGAAGGAATTATATTTATTCTTTGCACGATTTCTCTGTCTCTTCAGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGT]
consensusID : consensus_1561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGTTTACAGACCAGGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCC]
[+] EMBL CA329961 [CAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAGGAGGAGACGTACAAAAACGTGGTGCAGGAAGTGGTGGACTTTGAAAAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGAACCACCAGAGCCAAAGTCGGGGCTGACGGATTCATCCGTGTCGATCATGACTATGTACTTAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAGAGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGAGATCGAAGCGCTTGGTTTTGACAGATTTGCCGTTTACAGACCAGGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCC]
consensusID : consensus_1561#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[TAATACATGTCAACAGAACAGTAGTAGAGTTACCTGGAAGTGTTTTAAAGGGAACTAAATCTGGCACACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACTTTTGTGTTCCAGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCCATGGTTTCAAACACTCTGCTGCAGCCCGAGAATAAGACAGAGATCTTGTTTGAGTGAACATCTCCTTCC]
[-] EMBL CA846538 [TAATACATGTCAACAGAACAGTAGTAGAGTTACCTGGAAGTGTTTTAAAGGGAACTAAATCTGGCACACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAACAAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTGCTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACTTTTGTGTTCCAGCGTTTTGTTGGTAGACAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAACACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCCATGGTTTCAAACACTCTGCTGCAGCCCGAGAATAAGACAGAGATCTTGTTTGAGTGAACATCTCCTTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1561#0 --------------GTCGCAGTCGTTCTGTATCACCTCGAGGACCCTGGTTCCACTAAAT 46
consensus_1561#1 ------------------------------------------------------------
consensus_1561#2 TAATACATGTCAACAGAACAGTAGTAGAGTTACCTGGAAGTGTTTTAAAGGGAACTAAAT 60
consensus_1561#0 ACG----ACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAAC 102
consensus_1561#1 -----------------------------------------------CAGGGAGGAAAAC 13
consensus_1561#2 CTGGCACACAGCATGGCAGAGGACATGAAGACCCTGGAGGAAAATTTCAGGGAGGAAAAC 120
*************
consensus_1561#0 AAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTG 162
consensus_1561#1 AAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTG 73
consensus_1561#2 AAAAGCTGTTTCATCCTCGGTGCTTCTGGAGAGACGGGAAAGCTGCTGCTCCGAGAGGTG 180
************************************************************
consensus_1561#0 CTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAG 222
consensus_1561#1 CTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACCTTTGAG 133
consensus_1561#2 CTGGAGCGAAACATCTTCTCCAGGGTGACCCTCATCGGAAGGAGGAAGCTCACTTTTG-- 238
***************************************************** ****
consensus_1561#0 GAGGAGACGTACAAAAACGTGGTAAGTAGTTGTCCTCATATCCATCTTGATGAAGGAATT 282
consensus_1561#1 GAGGAGACGTACAAAAACGTGGT------------------------------------- 156
consensus_1561#2 -------TGTTCCAGCGTTTTGT------------------------------------- 254
** * * * **
consensus_1561#0 ATATTTATTCTTTGCACGATTTCTCTGTCTCTTCAGGTGCAGGAAGTGGTGGACTTTGAA 342
consensus_1561#1 --------------------------------------GCAGGAAGTGGTGGACTTTGAA 178
consensus_1561#2 ----------------------------------------------TGGTAGAC------ 262
**** ***
consensus_1561#0 AAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGA 402
consensus_1561#1 AAGCTTGATGACTATGCTGCTGCCTTCCAGGGTCATGATGTAGGATATTGCTGCCTGGGA 238
consensus_1561#2 AGGCAGGAGAGTCGACCTGCTGAGT----GGCTCGCCAGGAAGTTCTTCTGTGCTCTGTC 318
* ** ** ****** * ** ** * * ** * *** *
consensus_1561#0 ACCACCAGAGCCAAAGTCGGGG-CTGACGGATTCATCCGTGTCGATCATGACTATGTACT 461
consensus_1561#1 ACCACCAGAGCCAAAGTCGGGG-CTGACGGATTCATCCGTGTCGATCATGACTATGTACT 297
consensus_1561#2 AACACTGGGTTCCAATTCCATGTCTGTTCCAATC-CAAATGGTGGTCAAAGCCATGGTTT 377
* *** * * ** ** * *** * ** ** * *** * *** *
consensus_1561#0 TAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAG 521
consensus_1561#1 TAAATCTGCCGAGCTTGCCAAGTCAGGAGGCTGCACACAGTTCCACCTGGAGTCCTCCAG 357
consensus_1561#2 CAAACACTCTGCTGCAGCCCGAGAATAAGACAGAGATCTTGTTTGAGTGAACATCTCCTT 437
*** * * *** * ** * * * * ** * ****
consensus_1561#0 AGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGA 581
consensus_1561#1 AGGAGCCGATAAAAACAGCAGTTTCCTTTATCTCAAAGTCAAGGGACAAGTGGAATCAGA 417
consensus_1561#2 CC---------------------------------------------------------- 439
consensus_1561#0 GATCGAAGCGCTTGGTTTTGACAGATTTGCCGT--------------------------- 614
consensus_1561#1 GATCGAAGCGCTTGGTTTTGACAGATTTGCCGTTTACAGACCAGGCGTTTTGTTGGTAGA 477
consensus_1561#2 ------------------------------------------------------------
consensus_1561#0 ------------------------------------------------------------
consensus_1561#1 CAGGCAGGAGAGTCGACCTGCTGAGTGGCTCGCCAGGAAGTTCTTCTGTGCTCTGTCAAC 537
consensus_1561#2 ------------------------------------------------------------
consensus_1561#0 -------------------------------------------------
consensus_1561#1 ACTGGGTTCCAATTCCATGTCTGTTCCAATCCAAATGGTGGTCAAAGCC 586
consensus_1561#2 -------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |