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Takifugu rubripes
cluster # 1603 cluster # 1603       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1603#0 length = 345 sequences # 2  
 consensus_1603#1 length = 295 sequences # 1  
consensusID : consensus_1603#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 345
fasta sequence 
                              [AACGCCGCAACCATGTCTTCTACAACCCCTCTGGCAGGTGCCATAGCAGTCCTCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTCAAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCAAGAAAGGAGTCCAAGAAATGTTCGCGGCACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGGTTTATGCTTCAAGTGGCAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATAAACTGAATAAAAAGATTGGGCTTTACTGACTCTTTAAAAAAAAAAAAAAAA]

[+] EMBL CA846676             [AACGCCGCAACCATGTCTTCTACAACCCCTCTGGCAGGTGCCATAGCAGTCCTCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTCAAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCAAGAAAGGAGTCCAAGAAATGTTCGCGGCACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGATTTATGCTTCAAGTGGCAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATAAACTGAATAAAAAGATTGGGCTTTACTGACTCTTTAAAAAAAAAAAAAAAA]
[+] EMBL FR0056242            [                                                    TCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTCAACACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCACGAAAGGAGTCCAAGAAATGTTCGCGGCACTGGAAGATGGGAGCGGTGAGGTCGACTTCTGTGGGTTTATGCTTCAAGTGGCAACTCTAGCCA                                                                                ]




>consensus_1603#0
AACGCCGCAACCATGTCTTCTACAACCCCTCTGGCAGGTGCCATAGCAGTCCTCATGGGA
GTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTC
AAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCAAGAAAGGA
GTCCAAGAAATGTTCGCGGCACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGGTTT
ATGCTTCAAGTGGCAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATAAACTGA
ATAAAAAGATTGGGCTTTACTGACTCTTTAAAAAAAAAAAAAAAA

consensusID : consensus_1603#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence 
                              [CCATAGCAGTCCTCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTCAAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCACGAAAGGAGTCCAAGAGATGTTCGCGGGACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGATTTATGCTTCAAGTGGGAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATACACTGAATAAAAGGATTGGGCTTTACTGACAGGGAGGGAAG]

[+] EMBL FR0056197            [CCATAGCAGTCCTCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTCAAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCACGAAAGGAGTCCAAGAGATGTTCGCGGGACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGATTTATGCTTCAAGTGGGAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATACACTGAATAAAAGGATTGGGCTTTACTGACAGGGAGGGAAG]




>consensus_1603#1
CCATAGCAGTCCTCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGA
CCCTGAGCAGAGCTGAGGTCAAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGG
ATCCAAGTAGCACGAAAGGAGTCCAAGAGATGTTCGCGGGACTGGAAGATGGGAGCGGAG
AGGTCGACTTCTGTGGATTTATGCTTCAAGTGGGAACTCTAGCCATGATCTGCAAATCAC
TGGTTGATCCGATACACTGAATAAAAGGATTGGGCTTTACTGACAGGGAGGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1603#0      AACGCCGCAACCATGTCTTCTACAACCCCTCTGGCAGGTGCCATAGCAGTCCTCATGGGA 60
consensus_1603#1      ----------------------------------------CCATAGCAGTCCTCATGGGA 20
                                                              ********************

consensus_1603#0      GTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTC 120
consensus_1603#1      GTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTC 80
                      ************************************************************

consensus_1603#0      AAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCAAGAAAGGA 180
consensus_1603#1      AAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCACGAAAGGA 140
                      **************************************************** *******

consensus_1603#0      GTCCAAGAAATGTTCGCGGCACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGGTTT 240
consensus_1603#1      GTCCAAGAGATGTTCGCGGGACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGATTT 200
                      ******** ********** ************************************ ***

consensus_1603#0      ATGCTTCAAGTGGCAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATAAACTGA 300
consensus_1603#1      ATGCTTCAAGTGGGAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATACACTGA 260
                      ************* **************************************** *****

consensus_1603#0      ATAAAAAGATTGGGCTTTACTGACTCTTTAAAAAAAAAAAAAAAA 345
consensus_1603#1      ATAAAAGGATTGGGCTTTACTGAC-----AGGGAGGGAAG----- 295
                      ****** *****************     *   *   **


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)