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Takifugu rubripes
cluster # 1606 cluster # 1606       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1606#0 length = 458 sequences # 2  
 consensus_1606#1 length = 193 sequences # 1  
consensusID : consensus_1606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 458
fasta sequence 
                              [TCCCGTAAAGGAGCAGNTGTTTGTTTTATCGGATTTGTTGGAATCCTTAAAGCGAAGTTTTTAAAATAATAGTGAATATACTGCCGTAACGAGGAGGTAGTAGAGGGGAGCGAGTCCAGTGCGAGAAACTCACATCAGACACCGGTTCGGCTCTGCAGCGTAGTTATTTTTAAGCGAGGAAATAGTCGTGGGGGGATGCTGTTAGCAACGGAGTGACTTATAGCACTCGGTGTTTTTGTTGTGTGCTTTATTAGTTCAATCCACTGCGCCTTTACTTTACCTGGATAATGGAGTATCATGGTGGTGGGGCCGTGCTGAGCGGCAGTAACGTCCCGGCCTTTCTCACTTATCTGTGGACTTTGGTGGAAGACCCGGACACCGACCCGCTGATTTGTTGGAGCAAGACTGGAAACAGTTTCCATGTGTTTGACCAAGGTCGCTTCTCTAAAGAGATTCTG]

[+] EMBL CA588436             [TCCCGTAAAGGAGCAGNTGTTTGTTTTATCGGATTTGTTGGAATCCTTAAAGCGAAGTTTTTAAAATAATAGTGAATATACTGCCGTAACGAGGAGGTAGTAGA TCGATCGAGTCCAGTGCGAGAAACTCACATCAGACACCGGTTCGGCTCTGCAGCGTAGTTATTTTTAAGCGAGGAAATAGTCGTGGGGGGATGCTGTTAGCAACGGAGTGACTTATAGCACTCGGTGTTTTTGTTGTGTGCTTTATTAGTTCAATCCACTGCGCCTTTACTTTACCTGGATAATGGAGTATCATGGTGGTGGGGCCGTGCTGAGCGGCAGTAACGTCCCGGCCTTTCTCACTTATCTGTGGACTTTGGTGGAAGACCCGGACACCGACCCGCTGATTTGTTGGAGCAAGACTGGAAACAGTTTCCATGTGTTTGACCAAGGTCGCTTCTCTAAAGAGATTCTG]
[+] EMBL FR0060684            [                                                                             ATACTGCCGTAACGAGGAGGTAGTAGAGGGGAGCGAGTCCAGTG GAGAAACTCACATCAGACACCGGTTCGGCTCTGCAGCGTAGTTATTTTTAAGCGAGGAAATAGTCGTGGGGGGATGCTGTTAGCAACGGAGTGACTTATAGCACTCGGTGTTTTTGTTGTGTGCTTTATTAGTTCAATCCACTGCGCCTTTACTTTACCTGGATAATGGAGTATCATGGTGGTGGGGCCGTGCTGAGCGGCAGTAACGTCC                                                                                                                             ]




>consensus_1606#0
TCCCGTAAAGGAGCAGNTGTTTGTTTTATCGGATTTGTTGGAATCCTTAAAGCGAAGTTT
TTAAAATAATAGTGAATATACTGCCGTAACGAGGAGGTAGTAGAGGGGAGCGAGTCCAGT
GCGAGAAACTCACATCAGACACCGGTTCGGCTCTGCAGCGTAGTTATTTTTAAGCGAGGA
AATAGTCGTGGGGGGATGCTGTTAGCAACGGAGTGACTTATAGCACTCGGTGTTTTTGTT
GTGTGCTTTATTAGTTCAATCCACTGCGCCTTTACTTTACCTGGATAATGGAGTATCATG
GTGGTGGGGCCGTGCTGAGCGGCAGTAACGTCCCGGCCTTTCTCACTTATCTGTGGACTT
TGGTGGAAGACCCGGACACCGACCCGCTGATTTGTTGGAGCAAGACTGGAAACAGTTTCC
ATGTGTTTGACCAAGGTCGCTTCTCTAAAGAGATTCTG

consensusID : consensus_1606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence 
                              [CTGAGCGGTAGTAACCCTCGGGGGGGTCTCACCAAACTGTTACTTTGTGCAAAACCCGGACACCGACCCGCTGATTTGGTGGAGCAAGACTGGAAACAGTTTCCATGTGTTTGACCAAGGTCGCTTCTCTAAAGAGATTCTGCCAAAGATCTTCAAGCACAACAACATGGCTAGCTTTANTTAGACAGCGTAA]

[+] EMBL FR0059937            [CTGAGCGGTAGTAACCCTCGGGGGGGTCTCACCAAACTGTTACTTTGTGCAAAACCCGGACACCGACCCGCTGATTTGGTGGAGCAAGACTGGAAACAGTTTCCATGTGTTTGACCAAGGTCGCTTCTCTAAAGAGATTCTGCCAAAGATCTTCAAGCACAACAACATGGCTAGCTTTANTTAGACAGCGTAA]




>consensus_1606#1
CTGAGCGGTAGTAACCCTCGGGGGGGTCTCACCAAACTGTTACTTTGTGCAAAACCCGGA
CACCGACCCGCTGATTTGGTGGAGCAAGACTGGAAACAGTTTCCATGTGTTTGACCAAGG
TCGCTTCTCTAAAGAGATTCTGCCAAAGATCTTCAAGCACAACAACATGGCTAGCTTTAN
TTAGACAGCGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1606#0      TCCCGTAAAGGAGCAGNTGTTTGTTTTATCGGATTTGTTGGAATCCTTAAAGCGAAGTTT 60
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      TTAAAATAATAGTGAATATACTGCCGTAACGAGGAGGTAGTAGAGGGGAGCGAGTCCAGT 120
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      GCGAGAAACTCACATCAGACACCGGTTCGGCTCTGCAGCGTAGTTATTTTTAAGCGAGGA 180
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      AATAGTCGTGGGGGGATGCTGTTAGCAACGGAGTGACTTATAGCACTCGGTGTTTTTGTT 240
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      GTGTGCTTTATTAGTTCAATCCACTGCGCCTTTACTTTACCTGGATAATGGAGTATCATG 300
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      GTGGTGGGGCCGTGCTGAGCGGCAGTAACGTCCCGGCCTTTCTCACTTATCTGTGGACTT 360
consensus_1606#1      --------------CTGAGCGGTAGTAACCCTCGGGGGGGTCTCACCAAACTGTT-ACTT 45
                                    ******** ******   * **    ******  * ****  ****

consensus_1606#0      TGGTGGAAGACCCGGACACCGACCCGCTGATTTGTTGGAGCAAGACTGGAAACAGTTTCC 420
consensus_1606#1      TG-TGCAAAACCCGGACACCGACCCGCTGATTTGGTGGAGCAAGACTGGAAACAGTTTCC 104
                      ** ** ** ************************* *************************

consensus_1606#0      ATGTGTTTGACCAAGGTCGCTTCTCTAAAGAGATTCTG---------------------- 458
consensus_1606#1      ATGTGTTTGACCAAGGTCGCTTCTCTAAAGAGATTCTGCCAAAGATCTTCAAGCACAACA 164
                      **************************************                      

consensus_1606#0      -----------------------------
consensus_1606#1      ACATGGCTAGCTTTANTTAGACAGCGTAA 193


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)