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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 786 fasta sequence
[CTTAGGAGCAGGNGNTCTGTCTGGNTCACACGACCAACTTCCTTATAGGAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGGCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGTGTTTGAAGGCGAGCTAGCAGAGACCGGCCCAGTGGCCCACGCCTCCATCGCAGGCTGGCGCATCATCGGCCGCATGTGTGTGGGGAACCGCCACGGCCTGTTGGTGCCCAACAACACGACGGACCAGGAGCTGCAGCACATCAGGAACTGTCTCCCCGACAACGTCCGGATCCAGAGGGTGGAGGAGCGACTGTCCGCCCTCGGGAACGTCATCGCCTGCAACGACTACGTGGCGCTGGTCCACACCGACCTGGACAGGGAAACGGAGGAGATCCTGGCTGACACCCTGAAGGTGGAGGTTTTCCGTCAGACGGTGGCGGAGCAGGTCCTGGTCGGCTCTTACTGCGCCTTCAGCAACCAGGGAGGCCTCGTCCACCCAAAGACGTCCATCGAGGACCAGGACGAGCTGTCCTCGCTCCTGCAGGTCCCCCTGGTGGCGGGGACGGTGAACCGGGGGAGCGAGGTGATAACGGCG]
[+] EMBL CA588645 [CTTAGGAGCAGGNGNTCTGTCTGGNTCACACGACCAACTTCCTTATAGGAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGTGTTTGAAGGCGAGCTAGCAGAGACCGTCCCAGTGGTCCACGCCTCCATCGCAGGCTGTCGCATCATCGGCCGCATGTGTGTGGGGAACCGCCACGGCCTGTTGGTGCCCAACAACACGACGGACCAGGAGCTGCAGCACATCAGGAACTGTCTCCCCGACAACGTCCGGATCCAGAGGGTGGAGGAGCGACTGTCCGCCCTCGGGAACGTCATCGCCTGCAACGACTACGTGGCGCTGGTCCACACCGACCTGGACAGGGAAACGGAGGAGATCCTGGCTGACACCCTGAAGGTGGAGGTTTTCCGTCAGACGGTGGCGGAGCAGGTCCTGGTCGGCTCTTACTGCGCCTTCAGCAACCAGGGAGGCCTCGTCCACCCAAAGACGTCCATCGAGGACCAGGACGAGCTGTCCTCGCTCCTGCAGGTCCCCCTGGTGGCGGGGACGGTGAACCGGGGGAGCGAGGTGATAACGGCG]
[+] EMBL FR0062843 [ TCGTAACCGAAGCGGGGCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGTGTTTGAAGGCGAGCTAGCCGAGACCGGCCCAGTGGCCCACGCCTTCATCGCAGGCTGGCGCATCATCGGCCGCAT ]
consensusID : consensus_1610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence
[CTTATATTGAATGTTTGTTGTATTGGCGCGCACGTGGTCACCTTCAGCGCGTGAGCAGAGGTGTTCTGTCTGGTTCACACGACCAACTTGTGCATCGTAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTGACCGATCCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGGGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGGGGGTCCG]
[+] EMBL FR0057481 [CTTATATTGAATGTTTGTTGTATTGGCGCGCACGTGGTCACCTTCAGCGCGTGAGCAGAGGTGTTCTGTCTGGTTCACACGACCAACTTGTGCATCGTAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTGACCGATCCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGGGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGGGGGTCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1610#0 -------------------------------------------------CTTAGGAGCAG 11
consensus_1610#1 CTTATATTGAATGTTTGTTGTATTGGCGCGCACGTGGTCACCTTCAGCGCGTGAGCAGAG 60
* * * **
consensus_1610#0 GNGNTCTGTCTGGNTCACACGACCAACTTCCTTATAGGAGCTAGCCGAGCAGCTATTAGC 71
consensus_1610#1 GTGTTCTGTCTGGTTCACACGACCAACTTGTGCATCGTAGCTAGCCGAGCAGCTATTAGC 120
* * ********* *************** ** * **********************
consensus_1610#0 GCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAA 131
consensus_1610#1 GCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAA 180
************************************************************
consensus_1610#0 CCGAAGCGGGGCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCC 191
consensus_1610#1 ----------------CCGAAGCGGGTCGTGACCGATCCTGTCGTCTAGGACCAGGACCC 224
******************** ***********************
consensus_1610#0 GACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGC 251
consensus_1610#1 GACCGTCGCCATGGCCGTCAGAGCCTCGTTTGGGAAGAACAACGAGATCGGCTGCTTCGC 284
******************************** ***************************
consensus_1610#0 CAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGT 311
consensus_1610#1 CAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGGGGGTCCG---------------- 328
************************************ ** ****
consensus_1610#0 GTTTGAAGGCGAGCTAGCAGAGACCGGCCCAGTGGCCCACGCCTCCATCGCAGGCTGGCG 371
consensus_1610#1 ------------------------------------------------------------
consensus_1610#0 CATCATCGGCCGCATGTGTGTGGGGAACCGCCACGGCCTGTTGGTGCCCAACAACACGAC 431
consensus_1610#1 ------------------------------------------------------------
consensus_1610#0 GGACCAGGAGCTGCAGCACATCAGGAACTGTCTCCCCGACAACGTCCGGATCCAGAGGGT 491
consensus_1610#1 ------------------------------------------------------------
consensus_1610#0 GGAGGAGCGACTGTCCGCCCTCGGGAACGTCATCGCCTGCAACGACTACGTGGCGCTGGT 551
consensus_1610#1 ------------------------------------------------------------
consensus_1610#0 CCACACCGACCTGGACAGGGAAACGGAGGAGATCCTGGCTGACACCCTGAAGGTGGAGGT 611
consensus_1610#1 ------------------------------------------------------------
consensus_1610#0 TTTCCGTCAGACGGTGGCGGAGCAGGTCCTGGTCGGCTCTTACTGCGCCTTCAGCAACCA 671
consensus_1610#1 ------------------------------------------------------------
consensus_1610#0 GGGAGGCCTCGTCCACCCAAAGACGTCCATCGAGGACCAGGACGAGCTGTCCTCGCTCCT 731
consensus_1610#1 ------------------------------------------------------------
consensus_1610#0 GCAGGTCCCCCTGGTGGCGGGGACGGTGAACCGGGGGAGCGAGGTGATAACGGCG 786
consensus_1610#1 -------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |