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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence
[CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTGGGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCTTCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTACTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGATCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAGAAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTCAAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGTTGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACCCGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACACCACCCTGGAGCACTCTGACTGTG]
[+] EMBL CA341083 [CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTGGGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCTTCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTACTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGATCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAGAAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTCAAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGTTGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACCCGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACACCACCCTGGAGCACTCTGACTGTG]
[+] EMBL CA341009 [CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTGGGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCTTCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTACTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGATCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAGAAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTCAAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGTTGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACCCGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACACCACCCTGGAGCACTCTGACTG ]
consensusID : consensus_1611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[AGGATCCGTCAACTGTCAGATCAGTGCACGGGGCTTCAGGGATTCCTCATCTTTCACTCCTTTGGTGGGGACACTGGTTCAGGTTTCAGCTCACTGATGATGGAGAGACTCTCTGTCGATTATGGCACAGGGTCTAAGCTTGAGTTCGCCATCTACCCGGCAGTCCAGGTCTCCACTGCAGTGGTGGTGGCTTACAACTCCATCTTGACCACCCACACCACCATGGCGCACTCTGACTGTGCCTTCACGGTGGTCAACGAGGACATCTACGTGATCTGCCGCAGGAGCCTGGTCATTGAGAGGCCGACCTACACCAACCTTAACAGGCTCATCAGCCAGGTAGTGTCCTCCATCAC]
[+] EMBL FR0055465 [AGGATCCGTCAACTGTCAGATCAGTGCACGGGGCTTCAGGGATTCCTCATCTTTCACTCCTTTGGTGGGGACACTGGTTCAGGTTTCAGCTCACTGATGATGGAGAGACTCTCTGTCGATTATGGCACAGGGTCTAAGCTTGAGTTCGCCATCTACCCGGCAGTCCAGGTCTCCACTGCAGTGGTGGTGGCTTACAACTCCATCTTGACCACCCACACCACCATGGCGCACTCTGACTGTGCCTTCACGGTGGTCAACGAGGACATCTACGTGATCTGCCGCAGGAGCCTGGTCATTGAGAGGCCGACCTACACCAACCTTAACAGGCTCATCAGCCAGGTAGTGTCCTCCATCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1611#0 CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTG 60
consensus_1611#1 ------------------------------------------------------------
consensus_1611#0 GGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAG 120
consensus_1611#1 ------------------------------------------------------------
consensus_1611#0 ATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCT 180
consensus_1611#1 ------------------------------------------------------------
consensus_1611#0 TCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTA 240
consensus_1611#1 ------------------------------------------------------------
consensus_1611#0 CTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGA 300
consensus_1611#1 ------------------------------------------------------------
consensus_1611#0 TCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAG 360
consensus_1611#1 ------------------------------------------------------------
consensus_1611#0 AAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTC 420
consensus_1611#1 -----------------------AGGATCCGTCAACTGTCAGATCAGTGCACGGGGCTTC 37
*** *** ** ** * *********** ** ****
consensus_1611#0 AAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGT 480
consensus_1611#1 AGGGATTCCTCATCTTTCACTCCTTTGGTGGGGACACTGGTTCAGGTTTCAGCTCACTGA 97
* ******************************* ***************** *******
consensus_1611#0 TGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACC 540
consensus_1611#1 TGATGGAGAGACTCTCTGTCGATTATGGCACAGGGTCTAAGCTTGAGTTCGCCATCTACC 157
****************************** * *************** *** * ****
consensus_1611#0 CGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACA 600
consensus_1611#1 CGGCAGTCCAGGTCTCCACTGCAGTGGTGGTGGCTTACAACTCCATCTTGACCACCCACA 217
***** *********************** * ***************************
consensus_1611#0 CCACCCTGGAGCACTCTGACTGTG------------------------------------ 624
consensus_1611#1 CCACCATGGCGCACTCTGACTGTGCCTTCACGGTGGTCAACGAGGACATCTACGTGATCT 277
***** *** **************
consensus_1611#0 ------------------------------------------------------------
consensus_1611#1 GCCGCAGGAGCCTGGTCATTGAGAGGCCGACCTACACCAACCTTAACAGGCTCATCAGCC 337
consensus_1611#0 -------------------
consensus_1611#1 AGGTAGTGTCCTCCATCAC 356
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |