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Takifugu rubripes
cluster # 1611 cluster # 1611       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1611#0 length = 624 sequences # 2  
consensus_1611#1 length = 356 sequences # 1  

consensusID : consensus_1611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence
                              [CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTGGGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCTTCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTACTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGATCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAGAAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTCAAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGTTGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACCCGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACACCACCCTGGAGCACTCTGACTGTG]

[+] EMBL CA341083             [CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTGGGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCTTCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTACTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGATCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAGAAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTCAAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGTTGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACCCGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACACCACCCTGGAGCACTCTGACTGTG]
[+] EMBL CA341009             [CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTGGGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCTTCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTACTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGATCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAGAAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTCAAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGTTGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACCCGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACACCACCCTGGAGCACTCTGACTG  ]


>consensus_1611#0 CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTG GGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAG ATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCT TCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTA CTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGA TCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAG AAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTC AAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGT TGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACC CGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACA CCACCCTGGAGCACTCTGACTGTG



consensusID : consensus_1611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence
                              [AGGATCCGTCAACTGTCAGATCAGTGCACGGGGCTTCAGGGATTCCTCATCTTTCACTCCTTTGGTGGGGACACTGGTTCAGGTTTCAGCTCACTGATGATGGAGAGACTCTCTGTCGATTATGGCACAGGGTCTAAGCTTGAGTTCGCCATCTACCCGGCAGTCCAGGTCTCCACTGCAGTGGTGGTGGCTTACAACTCCATCTTGACCACCCACACCACCATGGCGCACTCTGACTGTGCCTTCACGGTGGTCAACGAGGACATCTACGTGATCTGCCGCAGGAGCCTGGTCATTGAGAGGCCGACCTACACCAACCTTAACAGGCTCATCAGCCAGGTAGTGTCCTCCATCAC]

[+] EMBL FR0055465            [AGGATCCGTCAACTGTCAGATCAGTGCACGGGGCTTCAGGGATTCCTCATCTTTCACTCCTTTGGTGGGGACACTGGTTCAGGTTTCAGCTCACTGATGATGGAGAGACTCTCTGTCGATTATGGCACAGGGTCTAAGCTTGAGTTCGCCATCTACCCGGCAGTCCAGGTCTCCACTGCAGTGGTGGTGGCTTACAACTCCATCTTGACCACCCACACCACCATGGCGCACTCTGACTGTGCCTTCACGGTGGTCAACGAGGACATCTACGTGATCTGCCGCAGGAGCCTGGTCATTGAGAGGCCGACCTACACCAACCTTAACAGGCTCATCAGCCAGGTAGTGTCCTCCATCAC]


>consensus_1611#1 AGGATCCGTCAACTGTCAGATCAGTGCACGGGGCTTCAGGGATTCCTCATCTTTCACTCC TTTGGTGGGGACACTGGTTCAGGTTTCAGCTCACTGATGATGGAGAGACTCTCTGTCGAT TATGGCACAGGGTCTAAGCTTGAGTTCGCCATCTACCCGGCAGTCCAGGTCTCCACTGCA GTGGTGGTGGCTTACAACTCCATCTTGACCACCCACACCACCATGGCGCACTCTGACTGT GCCTTCACGGTGGTCAACGAGGACATCTACGTGATCTGCCGCAGGAGCCTGGTCATTGAG AGGCCGACCTACACCAACCTTAACAGGCTCATCAGCCAGGTAGTGTCCTCCATCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1611#0      CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTG 60
consensus_1611#1      ------------------------------------------------------------
                                                                                  

consensus_1611#0      GGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAG 120
consensus_1611#1      ------------------------------------------------------------
                                                                                  

consensus_1611#0      ATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCT 180
consensus_1611#1      ------------------------------------------------------------
                                                                                  

consensus_1611#0      TCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTA 240
consensus_1611#1      ------------------------------------------------------------
                                                                                  

consensus_1611#0      CTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGA 300
consensus_1611#1      ------------------------------------------------------------
                                                                                  

consensus_1611#0      TCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAG 360
consensus_1611#1      ------------------------------------------------------------
                                                                                  

consensus_1611#0      AAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTC 420
consensus_1611#1      -----------------------AGGATCCGTCAACTGTCAGATCAGTGCACGGGGCTTC 37
                                              ***  *** ** ** * *********** ** ****

consensus_1611#0      AAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGT 480
consensus_1611#1      AGGGATTCCTCATCTTTCACTCCTTTGGTGGGGACACTGGTTCAGGTTTCAGCTCACTGA 97
                      * ******************************* ***************** ******* 

consensus_1611#0      TGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACC 540
consensus_1611#1      TGATGGAGAGACTCTCTGTCGATTATGGCACAGGGTCTAAGCTTGAGTTCGCCATCTACC 157
                      ****************************** *  *************** *** * ****

consensus_1611#0      CGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACA 600
consensus_1611#1      CGGCAGTCCAGGTCTCCACTGCAGTGGTGGTGGCTTACAACTCCATCTTGACCACCCACA 217
                      *****  *********************** * ***************************

consensus_1611#0      CCACCCTGGAGCACTCTGACTGTG------------------------------------ 624
consensus_1611#1      CCACCATGGCGCACTCTGACTGTGCCTTCACGGTGGTCAACGAGGACATCTACGTGATCT 277
                      ***** *** **************                                    

consensus_1611#0      ------------------------------------------------------------
consensus_1611#1      GCCGCAGGAGCCTGGTCATTGAGAGGCCGACCTACACCAACCTTAACAGGCTCATCAGCC 337
                                                                                  

consensus_1611#0      -------------------
consensus_1611#1      AGGTAGTGTCCTCCATCAC 356
                                         




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)