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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence
[TGAGGAGATAGCGCAGAATTTAGTGTTGACTCTTGATGTTTGAGGTACAATGACCCATCGGTTCATTCGTTAAAGTTGCAGGAAGTCGCCTGGAGAAATGCAGAGATTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGGGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAAATGTGTGTGTGTGTGTGTTTGCTGCTCTATGTCCATGTGTTAGACTTTAACCTACCCTAGTCTGGGCTTCCAGGATGTTGTCACTATAGATATGCTCAGAGAAGCATATCCAGTACTGGATGTTGTAGATCACAACAGGGGGCCCAAAGATAGTATACCAC]
[+] EMBL CA588546 [TGAGGAGATAGCGCAGAATTTAGTGTTGACTCTTGATGTTTGAGGTACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGT GCCTGGAGAAATGCAGAGATTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAAATGTGTGTGTGTGTGTGTTTGCTGCTCTATGTCCATGTGTTAGACTTTAACCTACCCTAGTCTGGGCTTCCAGGATGTTGTCACTATAGATATGCTCAGAGAAGCATATCCAGTACTGGATGTTGTAGATCACAACAGGGGGCCCAAAGATAGTATACCAC]
[+] EMBL FR0059470 [ GACCCATCGATTCATTCGTTAAAGTTGCAGGAAGTCGCCTGGAGAAATGCAGAGATTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGGGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCT ]
consensusID : consensus_1617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[TCATTCAAGCGCCATGAGGAGATAGCGCAGAATTTAGTGTTGACCCTAGATGGGTGAGGTACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGTGCCTGGAGAAATGCAGAGACTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAGATGTGTGTGTTGGTGTCAGGACAGGGTCCTGTGGAGGAGGTCGCTCACAAGTATCCTATGACAGAGATTTGACCTTAAATATTGAACCTATAAGTAGTTAAGTCAAGAGAGAT]
[+] EMBL CA588533 [TCATTCAAGCGCCATGAGGAGATAGCGCAGAATTTAGTGTTGACCCTAGATGGGTGAGGTACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGTGCCTGGAGAAATGCAGAGACTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAGATGTGTGTGTTGGTGTCAGGACAGGGTCCTGTGGAGGAGGTCGCTCACAAGTATCCTATGACAGAGATTTGACCTTAAATATTGAACCTATAAGTAGTTAAGTCAAGAGAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1617#0 --------------TGAGGAGATAGCGCAGAATTTAGTGTTGACTCTTGATGTTTGAGGT 46
consensus_1617#1 TCATTCAAGCGCCATGAGGAGATAGCGCAGAATTTAGTGTTGACCCTAGATGGGTGAGGT 60
****************************** ** **** ******
consensus_1617#0 ACAATGACCCATCGGTTCATTCGTTAAAGTTGCAGGAAGTCGCCTGGAGAAATGCAGAGA 106
consensus_1617#1 ACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGT-GCCTGGAGAAATGCAGAGA 119
************* ************************** *******************
consensus_1617#0 TTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAA 166
consensus_1617#1 CTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAA 179
***********************************************************
consensus_1617#0 CCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGT 226
consensus_1617#1 CCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGT 239
************************************************************
consensus_1617#0 CTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAG 286
consensus_1617#1 CTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAG 299
************************************************************
consensus_1617#0 CAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGGGGTGTTTGTC 346
consensus_1617#1 CAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTC 359
************************************************* **********
consensus_1617#0 ACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGAT 406
consensus_1617#1 ACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGAT 419
************************************************************
consensus_1617#0 GTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAG 466
consensus_1617#1 GTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAG 479
************************************************************
consensus_1617#0 TTCCATAAAATGTGTGTGTGTGTGTGTTTGCTGCTCTATGTCCATGTGTTAGACTTTAAC 526
consensus_1617#1 TTCCATAAGATGTGTGTGTTGGTGTCAGGACAGGGTCCTGTGGAGGAGGTCGCTCACAAG 539
******** ********** **** * * *** * * * * * **
consensus_1617#0 CTACCCTAGTCTGGGCTTCCA----GGATGTTGTCACTATAGATATGCTCAGAGAAGCAT 582
consensus_1617#1 TATCCTATGACAGAGATTTGACCTTAAATATTGAACCTATAAGTA-GTTAAGTCAAGAGA 598
** * * * * ** * ** *** ***** ** * * ** ***
consensus_1617#0 ATCCAGTACTGGATGTTGTAGATCACAACAGGGGGCCCAAAGATAGTATACCAC 636
consensus_1617#1 GAT--------------------------------------------------- 601
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |