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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[CAATGCCTCTTTATTATAGTACATGCTTGAGCATGGCACAAAACACAGCCATAGAAAGTTAAGCAAAATGATACAATTATCAATCACGGCGACTCACAGTGGATAACATCTAGAAAACAATGTTTAACTACCGCACTACATGAGGATGACCTCTTTTCCCACATTGACACAAAAAACAAAATCTTTTCATAAAAAGTAACCTGTAGAGCTAAAATGCAATAATAAACTTAAATACAAGAGATGCACGCTTGCTTTGAAGAAGCTGTACAAATGGTGCTGCTGAGCATCGGAGAGCAGCGTTTAAAAACGAGGTTTCTTAGAGGGGCCGTCAAATTCTTCACGGACCCTACCATAACCAGGGTTGCCAGGACCCATTCCCCTAGGGCCCCCCTGGGAGAAGCGCTCATTGCGCATGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCAAGTCCACCCATTGGGAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGGCGACGCATCTGCTCTTCCATCTC]
[+] EMBL CA333026 [CAATGCCTCTTTATTATAGTACATGCTTGAGCATGGCACAAAACACAGCCATAGAAAGTTAAGCAAAATGATACAATTATCAATCACGGCGACTCACAGTGGATAACATCTAGAAAACAATGTTTAACTACCGCACTACATGAGGATGACCTCTTTTCCCACATTGACACAAAAAACAAAATCTTTTCATAAAAAGTAACCTGTAGAGCTAAAATGCAATAATAAACTTAAATACAAGAGATGCACGCTTGCTTTGAAGAAGCTGTACAAATGGTGCTGCTGAGCATCGGAGAGCAGCGTTTAAAAACGAGGTTTCTTAGAGGGGCCGTCAAATTCTTCACGGACCCTACCATAACCAGGGTTGCCAGGACCCATTCCCCTAGGGCCCCCCTGGGAGAAGCGCTCATTGCGCATGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCAAGTCCACCCATTGGGAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGGCGACGCATCTGCTCTTCCATCTC]
consensusID : consensus_1628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence
[AGGAGACTTGGCATGCCATTGAGCCACCAACAAGAAAATTGCCACGTTAAAAGATGGCAGAGTCGGGAGTAACTTCCGGTCAGCTAGGCAAAAACCAAAAAAACCCAAAACAGCTGAAAAATCTATCAAGTAATGAAGTCCTTAAAAGTCGAATACATTACCATGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCAAGTCCACCCATTGGGAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGGCGACGCATCTGCTCTTCCATCTCCCGTTTCCGAAGCATTTCCTCTTCACGTCGCCGACGCTCTTCTTCTTGTCTTAACTGCAGCTCCTTTCTCTTCTGCATTTCTTGACTGTGCAGTTCCTCCATACGCCGCAACTCCTCCTGTCGTCTTAGAAGGTCTTGTCTTAACAAGTTGGCTTGGTGCTCGTGGTAGGCATCTTCCATCTCTGCCTCAAGCTTCTCCCGAGCTTCTTGCATGTTTTTTTCCACCTGCTGCCTCTGTTGCTT]
[+] EMBL CA331789 [AGGAGACTTGGCATGCCATTGAGCCACTAACAAGAAAATTGCCACGTTAAAAGATGGCAGAGTCGGGAGTAACTTCCGGTCAGCTAGGCAAAAACCAAAAAAACCCAAAACAGCTGAAAAATCTATCAAGTAATGAAGTCCTTAAAAGTCGAATACATTACCATGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCAAGTCCACCCATTGGGAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGGCGACGCATCTGCTCTTCCATCTCCCGTTTCCGAAGCATTTCCTCTTCACGTCGCCGACGCTCTTCTTCTTGTCTTAACTGCAGCTCCTTTCTCTTCTGCATTTCTTGACTGTGCAGTTCCTCCATACGCCGCAACTCCTCCTGTCGTCTTAGAAGGTCTTGTCTTAACAAGTTGGCTTGGTGCTCGTGGTAGGCATCTTCCATCTCTGCCTCAAGCTTCTCCCGAGCTTCTTGCATGTTTTTTTCCACCTGCTGCCTCTGTTGCTT]
[+] EMBL CA329708 [ GACTTGGCATGCCATTGATCCACCAACAAGAAAATTGCCACGTTAAAAGATGGCAGAGTCGGGAGTAACTTCCGGTCAGCTAGGCAAAAACCAAAAAAACCCAAAACAGCTGAAAAATCTATCAAGTAATGAAGTCCTTAAAAGTCGAATACATTACCATGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCAAGTCCACCCATTGGGAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGGCGACGCATCTGCTCTTCCATCTCCCGTTTCCGAAGCATTTCCTCTTCACGTCGCCGACGCTCTTCTTCTTGTCTTAACTGCAGCTCCTTTCTCTTCTGCATTTCTTGACTGTGCAGTTCCTCCATACGCCGCAACTCCTCCTGTCGTCTTAGAAGGTCTTGTCTTAACAAGTTGGCTTGGTGCTCGTGGTAGGCATCTTCCATCTCTGCCTCAAGCTTCTCCCGAGCTTCTTGCATGTTTTTTTCCACCTGCTGCCTCTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1628#0 CAATGCCTCTTTATTATAGTACATGCTTGAGCATGGCACAAAACACAGCCATAGAAAGTT 60
consensus_1628#1 --------AGGAGACTTGGCATGCCATTGAGC----CACCAACAAGAAAATTGCCACGTT 48
* * * ****** *** ** * * * * ***
consensus_1628#0 AAGCAAAATGATACAATTATCAATCACGGCGACTCACAGTGGATAACATCTAGAAAACAA 120
consensus_1628#1 AA--AAGATGGCAGAGTCGGGAGTAACTTCCGGTCAGCTAGGCAAAAACCAAAAAAACCC 106
** ** *** * * * * * ** * *** ** ** * * * *****
consensus_1628#0 TGTTTAACTACCGCA-CTACATGAGGATGACCTCTTTTCCCACATTGACACAAAAAACAA 179
consensus_1628#1 AAAACAGCTGAAAAATCTATCAAGTAATGAAGTCCTTA---AAAGTCGAATACATTACCA 163
* ** * *** **** ** ** * * * * * * ** *
consensus_1628#0 AATCTTTTCATAAAAAGTAACCTGTAGA-GCTAAAATGCAATAATAAACTTAAATACAAG 238
consensus_1628#1 TGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGC--- 220
** ** * * * ** **** *** * * ** * * * *** ** *
consensus_1628#0 AGATGCACGCTTGCTTTGAAGAAGCTGTACAAATGGTGCTGCTGAGCATCGGAGAGCAGC 298
consensus_1628#1 -----CAAGTCCACCCATTGGGAACT-TCTGACCAGCACCCAAACCCATGGCCCCACCTG 274
** * * * * ** * * * * *** * *
consensus_1628#0 GTTTAAAAACGAGGTTTCTTAGAGGGGCCGTCAAATTCTTCACGGACCCTACCATAACCA 358
consensus_1628#1 AATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATT--CTGTAGTTCTCCTC 332
** * * * *** * ** * ** ** * ** *
consensus_1628#0 GGGTTGCCAGGACCCATTCCCCTAGGGCCCCCCTGGGAGAAGCGCTCATTGCGCATGTCA 418
consensus_1628#1 ACGCTGGCGACGCATCTGCTCTTCCATCTCCCGTTTCCGAAGCATTTCCTCTTCACGTCG 392
* ** * * * * * * * *** * ***** * * ** ***
consensus_1628#0 TTGCCCATCATGTT----TCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCA-- 472
consensus_1628#1 CCGACGCTCTTCTTCTTGTCTTAACTGCAGCTCCTTTCTCTTCTGCATTTCTTGACTGTG 452
* * ** * ** ** * ** * * * **** *** *
consensus_1628#0 -AGTCCACCCATTGG--GAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTC 529
consensus_1628#1 CAGTTCCTCCATACGCCGCAACTCCTCCTGTCGTCTTAG---AAGGTCTTGTCTTAACAA 509
*** * **** * * * ** * * * * * ** * ** **
consensus_1628#0 ATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGG 589
consensus_1628#1 GTTGGCTTGGTGCTCGTGGTAGGCATCTTCCATCTCTGCCTCAAGCTTCTCCCGAGCT-- 567
** * * *** * *** * ** * ** ** * * * ***
consensus_1628#0 CGACGCATCTGCTCTTCCATCTC--------------- 612
consensus_1628#1 TCTTGCATGTTTTTTTCCACCTGCTGCCTCTGTTGCTT 605
**** * * ***** **
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |