Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1636 cluster # 1636       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1636#0 length = 622 sequences # 2  
consensus_1636#1 length = 605 sequences # 1  

consensusID : consensus_1636#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 622
fasta sequence
                              [GTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGATGTCATTTGATGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTCATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTACAGTATCACAGAGCAGTGAATCAATCATAGTGATTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCACACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCCTGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCCCCTTCTGACGGGTGTCCTCATCTTTGGATTTGTCGGGGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCAAACGGCCCTTATCGTTGGGGAAGGTGATCTTTGT]

[+] EMBL CA332258             [GTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGATGTCATTTGATGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTCATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTACAGTATCACAGAGCAGTGAATCAATCATAGTGATTTTAGTCCACTTCCTCAATGGTTTTTTTCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCACACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCCTGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCCCCTTCTGACGGGTGTCCTCATCTTTGGATTTGTCGGCGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCACACGGCC                           ]
[+] EMBL CA332256             [tTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGATGTCATTTGATGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTCATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTACAGTATCACAGAGCAGTGAATCAATCATAGTGATTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCACACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCCTGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCTCCTTCTGACGGGTGTCCTCATCTTTGTATTTGTCGGGGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCAAACGGCCCTTATCGTTGGGGAAGGTGATCTTTGT]


>consensus_1636#0 GTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGAT GTCATTTGATGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTCATGTTACA GGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTACAGTATCACAGAG CAGTGAATCAATCATAGTGATTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCTGC TCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGA TGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCA GCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCACACTTGTCGACGACCTTCTTCTTGT CCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCCTGCACGGTGCTCTTCATGTTGAAGG CGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCCCCTTCTGACGGGTGTCCTCATCTT TGGATTTGTCGGGGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCAAACGGCCCTTAT CGTTGGGGAAGGTGATCTTTGT



consensusID : consensus_1636#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence
                              [TACAAATATTTATTCAAAGGTGATATACAGAAAATAACGTGCTTCTATAATTCCCCTGTACAGAGTAGTTGACAACTTATTTAGGATTTTACAGCAATTGAAAAGCTCGTTTATGACTCAACATGTTTTTAGTCAAAACTTATACGATATATTAAACTATATTCAACAATTAACAAAATGAAAAAGTCCTTTTTAAAGTGTGTGAATGAATTTGAAGGGCGTCTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCCGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGCGATGGTCTCCTCACACTTGCCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCCTCCTGCACGCTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCTCCCTCTGCTGGTCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCAACATCCTCTCGATCTCTTCTTT]

[+] EMBL CA331145             [TACAAATATTTATTCAAAGGTGATATACAGAAAATAACGTGCTTCTATAATTCCCCTGTACAGAGTAGTTGACAACTTATTTAGGATTTTACAGCAATTGAAAAGCTCGTTTATGACTCAACATGTTTTTAGTCAAAACTTATACGATATATTAAACTATATTCAACAATTAACAAAATGAAAAAGTCCTTTTTAAAGTGTGTGAATGAATTTGAAGGGCGTCTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCCGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGCGATGGTCTCCTCACACTTGCCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCCTCCTGCACGCTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCTCCCTCTGCTGGTCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCAACATCCTCTCGATCTCTTCTTT]


>consensus_1636#1 TACAAATATTTATTCAAAGGTGATATACAGAAAATAACGTGCTTCTATAATTCCCCTGTA CAGAGTAGTTGACAACTTATTTAGGATTTTACAGCAATTGAAAAGCTCGTTTATGACTCA ACATGTTTTTAGTCAAAACTTATACGATATATTAAACTATATTCAACAATTAACAAAATG AAAAAGTCCTTTTTAAAGTGTGTGAATGAATTTGAAGGGCGTCTTTAGTCCACTTCCTCA ATGGTTGGCCCCTGGGAGCCGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCT CCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGT TGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGCGATGGTCTCCTCACAC TTGCCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCCTCCTGC ACGCTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCTCC CTCTGCTGGTCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCAACATCCTCTCGATCTCT TCTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1636#0      -GTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGA 59
consensus_1636#1      TACAAATATTTATTCAAAGGTGATATACAGAAAATAACGTGCTTCTATAATTCCCCTGTA 60
                         ***  * * ** *    *  ** *  *  *  **  ** *  *  *** *   *  *

consensus_1636#0      TGTCAT--TTGA-----TGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTC 112
consensus_1636#1      CAGAGTAGTTGACAACTTATTTAGGATTTTACAGC---AATTGAAAAGCTCGTTTATGAC 117
                           *  ****     * *  *  ** *** **     * ** ***    *   *** *

consensus_1636#0      ATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTA-CAGT 171
consensus_1636#1      TCAACATGTTTTTAGTCAAAACTTATACGATATATTAAACTATATTCAACAATTAACAAA 177
                           *    * ** **  **     * **   * ****  **  *  *   *** **  

consensus_1636#0      ATCACAGAGCA-------------GTGAATCAATC---ATAGTGATTTTAGTCCACTTCC 215
consensus_1636#1      ATGAAAAAGTCCTTTTTAAAGTGTGTGAATGAATTTGAAGGGCGTCTTTAGTCCACTTCC 237
                      ** * * **               ****** ***    *  * *  **************

consensus_1636#0      TCAATGGTTGGCCCCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATT 275
consensus_1636#1      TCAATGGTTGGCCCCTGGGAGCCGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATT 297
                      ********************** *************************************

consensus_1636#0      CCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGG 335
consensus_1636#1      CCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGG 357
                      ************************************************************

consensus_1636#0      TGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCA 395
consensus_1636#1      TGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGCGATGGTCTCCTCA 417
                      ********************************************** ** **********

consensus_1636#0      CACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCC 455
consensus_1636#1      CACTTGCCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCCTCC 477
                      ****** ************************************************* ***

consensus_1636#0      TGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTC 515
consensus_1636#1      TGCACGCTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTC 537
                      ****** *****************************************************

consensus_1636#0      CCCTTCTGACGGGTGTCCTCATCTTTGGATTTGTCGGGGTCCTGCACCATCCTCTCGATC 575
consensus_1636#1      TCCCTCTGCTGGTCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCAACATCCTCTCGATC 597
                       ** ****  **  ******* ***** ********* ******** *************

consensus_1636#0      TCTTCTTTGCTCAAACGGCCCTTATCGTTGGGGAAGGTGATCTTTGT 622
consensus_1636#1      TCTTCTTT--------------------------------------- 605
                      ********                                       




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)