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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence
[GTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGATGTCATTTGATGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTCATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTACAGTATCACAGAGCAGTGAATCAATCATAGTGATTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCACACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCCTGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCCCCTTCTGACGGGTGTCCTCATCTTTGGATTTGTCGGGGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCAAACGGCCCTTATCGTTGGGGAAGGTGATCTTTGT]
[+] EMBL CA332258 [GTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGATGTCATTTGATGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTCATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTACAGTATCACAGAGCAGTGAATCAATCATAGTGATTTTAGTCCACTTCCTCAATGGTTTTTTTCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCACACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCCTGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCCCCTTCTGACGGGTGTCCTCATCTTTGGATTTGTCGGCGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCACACGGCC ]
[+] EMBL CA332256 [tTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGATGTCATTTGATGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTCATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTACAGTATCACAGAGCAGTGAATCAATCATAGTGATTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCACACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCCTGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCTCCTTCTGACGGGTGTCCTCATCTTTGTATTTGTCGGGGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCAAACGGCCCTTATCGTTGGGGAAGGTGATCTTTGT]
consensusID : consensus_1636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[TACAAATATTTATTCAAAGGTGATATACAGAAAATAACGTGCTTCTATAATTCCCCTGTACAGAGTAGTTGACAACTTATTTAGGATTTTACAGCAATTGAAAAGCTCGTTTATGACTCAACATGTTTTTAGTCAAAACTTATACGATATATTAAACTATATTCAACAATTAACAAAATGAAAAAGTCCTTTTTAAAGTGTGTGAATGAATTTGAAGGGCGTCTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCCGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGCGATGGTCTCCTCACACTTGCCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCCTCCTGCACGCTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCTCCCTCTGCTGGTCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCAACATCCTCTCGATCTCTTCTTT]
[+] EMBL CA331145 [TACAAATATTTATTCAAAGGTGATATACAGAAAATAACGTGCTTCTATAATTCCCCTGTACAGAGTAGTTGACAACTTATTTAGGATTTTACAGCAATTGAAAAGCTCGTTTATGACTCAACATGTTTTTAGTCAAAACTTATACGATATATTAAACTATATTCAACAATTAACAAAATGAAAAAGTCCTTTTTAAAGTGTGTGAATGAATTTGAAGGGCGTCTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCCGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGCGATGGTCTCCTCACACTTGCCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCCTCCTGCACGCTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCTCCCTCTGCTGGTCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCAACATCCTCTCGATCTCTTCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1636#0 -GTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGA 59
consensus_1636#1 TACAAATATTTATTCAAAGGTGATATACAGAAAATAACGTGCTTCTATAATTCCCCTGTA 60
*** * * ** * * ** * * * ** ** * * *** * * *
consensus_1636#0 TGTCAT--TTGA-----TGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTC 112
consensus_1636#1 CAGAGTAGTTGACAACTTATTTAGGATTTTACAGC---AATTGAAAAGCTCGTTTATGAC 117
* **** * * * ** *** ** * ** *** * *** *
consensus_1636#0 ATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTA-CAGT 171
consensus_1636#1 TCAACATGTTTTTAGTCAAAACTTATACGATATATTAAACTATATTCAACAATTAACAAA 177
* * ** ** ** * ** * **** ** * * *** **
consensus_1636#0 ATCACAGAGCA-------------GTGAATCAATC---ATAGTGATTTTAGTCCACTTCC 215
consensus_1636#1 ATGAAAAAGTCCTTTTTAAAGTGTGTGAATGAATTTGAAGGGCGTCTTTAGTCCACTTCC 237
** * * ** ****** *** * * * **************
consensus_1636#0 TCAATGGTTGGCCCCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATT 275
consensus_1636#1 TCAATGGTTGGCCCCTGGGAGCCGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATT 297
********************** *************************************
consensus_1636#0 CCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGG 335
consensus_1636#1 CCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGG 357
************************************************************
consensus_1636#0 TGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCA 395
consensus_1636#1 TGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGCGATGGTCTCCTCA 417
********************************************** ** **********
consensus_1636#0 CACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCC 455
consensus_1636#1 CACTTGCCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCCTCC 477
****** ************************************************* ***
consensus_1636#0 TGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTC 515
consensus_1636#1 TGCACGCTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTC 537
****** *****************************************************
consensus_1636#0 CCCTTCTGACGGGTGTCCTCATCTTTGGATTTGTCGGGGTCCTGCACCATCCTCTCGATC 575
consensus_1636#1 TCCCTCTGCTGGTCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCAACATCCTCTCGATC 597
** **** ** ******* ***** ********* ******** *************
consensus_1636#0 TCTTCTTTGCTCAAACGGCCCTTATCGTTGGGGAAGGTGATCTTTGT 622
consensus_1636#1 TCTTCTTT--------------------------------------- 605
********
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |