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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[TGAAAAAAAAATGAAAGTTTTCCTGGCGTTAACTGCTTTGCTGGCAACTTGCCTGGCACAGGAGCCTCATCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGTGGTCCTAGGAGATCTATGACTCCTGGAATTGTCTTATCCAAAGAAAGCACACGTTTGGTGTGATATTTCAGTGTTAGAGCGCTTAATTTGTTTGATTATTTATTGTTTGTCCCATAGTTAATGTCTTTTAAACCTGCTCCTGCAGTTTTTATGAGCTCCTTTGAAAAAAGGCGCAGTAAAAACGGTGAACAAGTCCAAGTAAGATAAGCATTAAAGGCACCCAAAGCGTACTGTGTTTTATTAGTAAGACAAGGAACTGGGCCATGGCTGCACTCTAAAACTCTCGTTATTTTTTAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAA]
[+] EMBL CA846780 [TGAAAAAAAAATGAAAGTTTTCCTGGCGTTAACTGCTTTGCTGGCAACTTGCCTGGCACAGGAGCCTCATCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGTGGTCCTAGGAGATCTATGACTCCTGGAATTGTCTTATCCAAAGAAAGCACACGTTTGGTGTGATATTTCAGTGTTAGAGCGCTTAATTTGTTTGATTATTTATTGTTTGTCCCATAGTTAATGTCTTTTAAACCTGCTCCTGCAGTTTTTATGAGCTCCTTTGAAAAAAGGCGCAGTAAAAACGGTGAACAAGTCCAAGTAAGATAAGCATTAAAGGCACCCAAAGCGTACTGTGTTTTATTAGTAAGACAAGGAACTGGGCCATGGCTGCACTCTAAAACTCTCGTTATTTTTTAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAA]
consensusID : consensus_1643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence
[TGTTGGCAACTTGCCTGGCACAGGAGCCTGAGTCCATGCAGGAGGGCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAAGAAGGCGCCGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAGGCCATTCTCGGAAGTTCATCTGCACCCGGACAGGGACTTCTGGTCAACACCTGGATGGGAGACCTGCCCAAAACAGGAGGGAAAGGACTTGA]
[+] EMBL FR0062977 [TGTTGGCAACTTGCCTGGCACAGGAGCCTG GTCCATGCAGGAGGGCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAAGAAGTCGCCGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAGGCCATTCTCGGAAGTTTATCTGCACCCGGACAGGGA ]
[+] EMBL FR0062943 [ TGGCAACTTGCCTGGCACAGGAGCCTGAGTCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAAGAAGGCGCCGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAGGCCATTCTCGGAAGTTCATCTGCACCCGGACAGGGACTTCTGGTCAACACCTGGATGGGAGACCTGCCCAAAACAGGAGGGAAAGGACTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1643#0 TGAAAAAAAAATGAAAGTTTTCCTGGCGTTAACTGCTTTGCTGGCAACTTGCCTGGCACA 60
consensus_1643#1 --------------------------------------TGTTGGCAACTTGCCTGGCACA 22
** *******************
consensus_1643#0 GGAGCCTCA-TCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACAC 119
consensus_1643#1 GGAGCCTGAGTCCATGCAGGAGGGCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACAC 82
******* * ************ ************************************
consensus_1643#0 AAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCC 179
consensus_1643#1 AAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCC 142
************************************************************
consensus_1643#0 GCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACT 239
consensus_1643#1 GCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACT 202
************************************************************
consensus_1643#0 TCCGAAAGGTGGTCCTAGGAGATCTATGACTCCTGGAATTGTCTTATCCAAAGAAAGCAC 299
consensus_1643#1 TCCGAAAGGGCATCATGTACGAGAT-TAACAGAAAGAATAAGAC-ATGCAA-GAAGGCGC 259
********* ** * ** * * ** **** ** *** *** ** *
consensus_1643#0 ACGTTTGGTGTGATATTTCAGTGTTAGAGCGCTTAATTTGTTTGATTATTTATTGTTTGT 359
consensus_1643#1 -CGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAG 318
** * ** *** * * * * * * ** * *
consensus_1643#0 CCCATAGTT--AATGTCTTTTAAACCTGCTCCTGCAGTTTTTATGAGCTCCTTTGAAAAA 417
consensus_1643#1 GCCATTCTCGGAAGTTCATCTGCACCCGGACAGGGACTTCTGGTCAACACCTG-GATGGG 377
**** * ** ** * * *** * * * * ** * * * * *** **
consensus_1643#0 AGGCGCAGTAAAAACGGTGAACAAGTCCAAGTAAGATAAGCATTAAAGGCACCCAAAGCG 477
consensus_1643#1 AGACCTGCCCAAAACAG-GAGGGAAAGGACTTGA-------------------------- 410
** * ***** * ** * * * *
consensus_1643#0 TACTGTGTTTTATTAGTAAGACAAGGAACTGGGCCATGGCTGCACTCTAAAACTCTCGTT 537
consensus_1643#1 ------------------------------------------------------------
consensus_1643#0 ATTTTTTAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAA 587
consensus_1643#1 --------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |