These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [TGAAAAAAAAATGAAAGTTTTCCTGGCGTTAACTGCTTTGCTGGCAACTTGCCTGGCACAGGAGCCTCATCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGTGGTCCTAGGAGATCTATGACTCCTGGAATTGTCTTATCCAAAGAAAGCACACGTTTGGTGTGATATTTCAGTGTTAGAGCGCTTAATTTGTTTGATTATTTATTGTTTGTCCCATAGTTAATGTCTTTTAAACCTGCTCCTGCAGTTTTTATGAGCTCCTTTGAAAAAAGGCGCAGTAAAAACGGTGAACAAGTCCAAGTAAGATAAGCATTAAAGGCACCCAAAGCGTACTGTGTTTTATTAGTAAGACAAGGAACTGGGCCATGGCTGCACTCTAAAACTCTCGTTATTTTTTAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAA] [+] EMBL CA846780 [TGAAAAAAAAATGAAAGTTTTCCTGGCGTTAACTGCTTTGCTGGCAACTTGCCTGGCACAGGAGCCTCATCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGTGGTCCTAGGAGATCTATGACTCCTGGAATTGTCTTATCCAAAGAAAGCACACGTTTGGTGTGATATTTCAGTGTTAGAGCGCTTAATTTGTTTGATTATTTATTGTTTGTCCCATAGTTAATGTCTTTTAAACCTGCTCCTGCAGTTTTTATGAGCTCCTTTGAAAAAAGGCGCAGTAAAAACGGTGAACAAGTCCAAGTAAGATAAGCATTAAAGGCACCCAAAGCGTACTGTGTTTTATTAGTAAGACAAGGAACTGGGCCATGGCTGCACTCTAAAACTCTCGTTATTTTTTAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAA] consensusID : consensus_1643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence [TGTTGGCAACTTGCCTGGCACAGGAGCCTGAGTCCATGCAGGAGGGCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAAGAAGGCGCCGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAGGCCATTCTCGGAAGTTCATCTGCACCCGGACAGGGACTTCTGGTCAACACCTGGATGGGAGACCTGCCCAAAACAGGAGGGAAAGGACTTGA] [+] EMBL FR0062977 [TGTTGGCAACTTGCCTGGCACAGGAGCCTG GTCCATGCAGGAGGGCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAAGAAGTCGCCGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAGGCCATTCTCGGAAGTTTATCTGCACCCGGACAGGGA ] [+] EMBL FR0062943 [ TGGCAACTTGCCTGGCACAGGAGCCTGAGTCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAAGAAGGCGCCGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAGGCCATTCTCGGAAGTTCATCTGCACCCGGACAGGGACTTCTGGTCAACACCTGGATGGGAGACCTGCCCAAAACAGGAGGGAAAGGACTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1643#0 TGAAAAAAAAATGAAAGTTTTCCTGGCGTTAACTGCTTTGCTGGCAACTTGCCTGGCACA 60 consensus_1643#1 --------------------------------------TGTTGGCAACTTGCCTGGCACA 22 ** ******************* consensus_1643#0 GGAGCCTCA-TCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACAC 119 consensus_1643#1 GGAGCCTGAGTCCATGCAGGAGGGCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACAC 82 ******* * ************ ************************************ consensus_1643#0 AAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCC 179 consensus_1643#1 AAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCC 142 ************************************************************ consensus_1643#0 GCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACT 239 consensus_1643#1 GCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACT 202 ************************************************************ consensus_1643#0 TCCGAAAGGTGGTCCTAGGAGATCTATGACTCCTGGAATTGTCTTATCCAAAGAAAGCAC 299 consensus_1643#1 TCCGAAAGGGCATCATGTACGAGAT-TAACAGAAAGAATAAGAC-ATGCAA-GAAGGCGC 259 ********* ** * ** * * ** **** ** *** *** ** * consensus_1643#0 ACGTTTGGTGTGATATTTCAGTGTTAGAGCGCTTAATTTGTTTGATTATTTATTGTTTGT 359 consensus_1643#1 -CGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAG 318 ** * ** *** * * * * * * ** * * consensus_1643#0 CCCATAGTT--AATGTCTTTTAAACCTGCTCCTGCAGTTTTTATGAGCTCCTTTGAAAAA 417 consensus_1643#1 GCCATTCTCGGAAGTTCATCTGCACCCGGACAGGGACTTCTGGTCAACACCTG-GATGGG 377 **** * ** ** * * *** * * * * ** * * * * *** ** consensus_1643#0 AGGCGCAGTAAAAACGGTGAACAAGTCCAAGTAAGATAAGCATTAAAGGCACCCAAAGCG 477 consensus_1643#1 AGACCTGCCCAAAACAG-GAGGGAAAGGACTTGA-------------------------- 410 ** * ***** * ** * * * * consensus_1643#0 TACTGTGTTTTATTAGTAAGACAAGGAACTGGGCCATGGCTGCACTCTAAAACTCTCGTT 537 consensus_1643#1 ------------------------------------------------------------ consensus_1643#0 ATTTTTTAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAA 587 consensus_1643#1 -------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |