These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 634 fasta sequence [ATTTTTATTTGACACCATCCTGTAATTGTTAATCGTTTACTTTGTTTTTGTTTAAATATTTGCACGAGAATTCTTTTTTCCCTTACAAAATGTGTTTTCCCCCTCCCCATTCTGAAAATTTCCCCGGTTCACAGTAGGCTGTGGAGGAATTGCAGCAGCTCTTCTCCGCGATGGAGGGACGTGCCTGATTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGGGGGGGGTCACAGTTTGAAAGAAGATGTGCCGACAGCAGCAAGAAAGTGATTTTGCAGAGAAACTAGTTGTATTTTTGGCTTTCGCTGTTGTGATGAGTGATCGTGTGTTTGTGTGTGACGTGTAGGCCGTAGTGTTGCCGTGTGTATGGAAACACACGTTTTGTCTGTGTTATTTCTGCAAGAGAGTGTGTGTGTGCGCGTGTGTGTGGTTGTCGGGTCAGGCCCTGCGCTCGACGGGCTGTTTTAGGCAAACTTCACTGCCGGCCGATATGATGGGGAGCCGGTTGTCCATGTGGGAGCTGATCAGATGACTCACGCTTTCAAACCGATGATCCTTAGTACGAACCACTCCTTCTGGATCGACGAGAAGCAGGTGCTTGGGCTGACCCCCCTGCTGCCCCGTCAGGACGTA] [+] EMBL CA331182 [ATTTTTATTTGACACCATCCTGTAATTGTTAATCGTTTACTTTGTTTTTGTTTAAATATTTGCACGAGAATTCTTTTTTCCCTTACAAAATGTGTTTTCCCCCTCCCCATTCTGAAAATTTCCCCGGTTCACAGTAGGCTGTGGAGGAATTGCAGCAGCTCTTCTCCGCGATGGAGGGACGTGCCTGATTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGGGGGGGGTCACAGTTTGAAAGAAGATGTGCCGACAGCAGCAAGAAAGTGATTTTGCAGAGAAACTAGTTGTATTTTTGGCTTTCGCTGTTGTGATGAGTGATCGTGTGTTTGTGTGTGACGTGTAGGCCGTAGTGTTGCCGTGTGTATGGAAACACACGTTTTGTCTGTGTTATTTCTGCAAGAGAGTGTGTGTGTGCGCGTGTGTGTGGTTGTCGGGTCAGGCCCTGCGCTCGACGGGCTGTTTTAGGCAAACTTCACTGCCGGCCGATATGATGGGGAGCCGGTTGTCCATGTGGTAGCTGATCAGATGACTCACGCTTTCAAACCGATGATCCTTAGTACGAACCACTCCTTCTGGATCGACGAGAAGCAGGTGCTTGGGCTGACCCCCCTGCTGCCCCGTCAGGACGTA] [+] EMBL CA331658 [ATTTTTATTTGACACCATCCTGTAATTGTTAATCGTTTACTTTGTTTTTGTTTAAATATTTGCACGAGAATTCTTTTTTCCCTTACAAAATGTGTTTTCCCCCTCCCCATTCTGAAAATTTCCCCGGTTCACAGTAGGCTGTGGAGGAATTGCAGCAGCTCTTCTCCGCGATGGAGGGACGTGCCTGATTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGGGGGGGGTCACAGTTTGAAAGAAGATGTGCCGACAGCAGCAAGAAAGTGATTTTGCAGAGAAACTAGTTGTATTTTTGGCTTTCGCTGTTGTGATGAGTGATCGTGTGTTTGTGTGTGACGTGTAGGCCGTAGTGTTGCCGTGTGTATGGAAACACACGTTTTGTCTGTGTTATTTCTGCAAGAGAGTGTGTGTGTGCGCGTGTGTGTGGTTGTCGGGTCAGGCCCTGCGCTCGACGGGCTGTTTTAGGCAAACTTCACTGCCGGCCGATATGATGGGGAGCCGGTTGTCCATGTGGGAGCTGATCAGATGACTCACGCTTTCAAACCGATGATCCTTAATACGAACCACTCCTTCTGGATCGACGAAAAGCAG ] consensusID : consensus_1645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [ATATTTAAACAAAAACAAAGTAAACGATTAACAATTACAGGATGGTGTCAAATAAAAATGGACCTAAAAAAAAAAAAAAAAAGCATAAATGGGACAGAAAGAAAAGAACTTTTGCTGCATTACAGGACAAGTTCTTTCAGGCAAGGGAAGTTTTCCCTCTTCAGATTATCGCTGGAGCCTTCGAGACAAGACAAAAGTGGACGGTGGCGTTTCCGACTCATCTGGGCTGGAACATAAACTGTAGCTGCACAACCAACTCTACCGTGTCCGTCCGCCGTGTGAATATGCGTAAACAATTCTGCTTCCACTCTAATCAGAGGGGCCACCGCATCCCCACCTTTAAGGACCTTTGAACTTTGACCTCAGAGTGATACTTGAGGAAAGCCCGTATGCAATACTGGGGACTGCTATACTGTCACGTGTTTCTTTTCTCTTTGCTTTTTGACTCTTGTTGAACATTCAAAGTTGAGGAGGATCAAAACAGCTGCATATTCCTGTTTTCTCTGTGAATGCAGATACACAAACGTGCACCAAAGAACACGAAACCTGTTCAAATACAGCAAAGAAAACCAGACGCGTCTTGTGATCTAACAAGCTGAGCGGCAAAATGGGAA] [+] EMBL BU807163 [ATATTTAAACAAAAACAAAGTAAACGATTAACAATTACAGGATGGTGTCAAATAAAAATGGACCTAAAAAAAAAAAAAAAAAGCATAAATGGGACAGAAAGAAAAGAACTTTTGCTGCATTACAGGACAAGTTCTTTCAGGCAAGGGAAGTTTTCCCTCTTCAGATTATCGCTGGAGCCTTCGAGACAAGACAAAAGTGGACGGTGGCGTTTCCGACTCATCTGGGCTGGAACATAAACTGTAGCTGCACAACCAACTCTACCGTGTCCGTCCGCCGTGTGAATATGCGTAAACAATTCTGCTTCCACTCTAATCAGAGGGGCCACCGCATCCCCACCTTTAAGGACCTTTGAACTTTGACCTCAGAGTGATACTTGAGGAAAGCCCGTATGCAATACTGGGGACTGCTATACTGTCACGTGTTTCTTTTCTCTTTGCTTTTTGACTCTTGTTGAACATTCAAAGTTGAGGAGGATCAAAACAGCTGCATATTCCTGTTTTCTCTGTGAATGCAGATACACAAACGTGCACCAAAGAACACGAAACCTGTTCAAATACAGCAAAGAAAACCAGACGCGTCTTGTGATCTAACAAGCTGAGCGGCAAAATGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1645#0 ATTTTTATTTGACACCATCCTGTAATTGTTAATCGTT-TACTTTGTTTTTGTTTAAATAT 59 consensus_1645#1 ATATTTAAACAAAAACAAAGTA-AACGATTAACAATTACAGGATGGTGTCAAATAAAAAT 59 ** **** * * ** * ** **** ** * ** * * **** ** consensus_1645#0 TTGCACGAGAATTCTTTTTTCCCTTACAAAATGTGTTTTCCCCCTCCCCATTCTGAAAAT 119 consensus_1645#1 GGACCTAAAAA---------AAAAAAAAAAAAGCATAAATGGGACAGAAAGAAAAGAACT 110 * * ** * **** * * * ** * consensus_1645#0 TTCCCCGGTTCACAGTAGGCTGTGGAGGAATTGCAGCAGCTCTTCTCCGCGATGGAGGGA 179 consensus_1645#1 TTTGCTGCATTACAGGACAAGTTCTTTCAGGCAAGGGAAGTTTTCCCTCT---------- 160 ** * * * **** * * * * * * *** * consensus_1645#0 CGTGCCTGATTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGGGGGGGGTCACAGTTTGA 239 consensus_1645#1 ----TCAGATTATCGCTG-GAGCCTTCGAGACAAGACAAAAGTGGACGGTGGCGTTTCCG 215 * **** * ** * * * * * ** * ** *** * ** consensus_1645#0 AAGAAGATGTGCCGACAGCAGCAAGAAAGTGATTTTGCAGAGAAACTAGTTGTATTTTTG 299 consensus_1645#1 ACTCATCTGGGCTGG-AACAT--AAACTGTAGCTGCACAACCAACTCTACCGTGTCCGTC 272 * * ** ** * * ** * * ** * ** ** ** * * consensus_1645#0 GCTTTCGCTGTTGTG-ATGAGTGATCGTGTGTTTGTGTGTGACGTGTAGGCCGTAGTGTT 358 consensus_1645#1 CGCCGTGTGAATATGCGTAAACAATTCTGCTTCCACTCTAATCAGAGGGGCCACCGCATC 332 * * ** * * ** ** * * **** * * consensus_1645#0 GCCGTGTGTATGGAAACACACGTTTTG---TCTGTGTTATTTCTGCAAGAGAGTGTGTGT 415 consensus_1645#1 CCCACCTTTAAGGACCTTTGAACTTTGACCTCAGAGTGATACTTG-AGGAAAGCCCGTAT 391 ** * ** *** **** ** * ** ** ** * ** ** ** * consensus_1645#0 GTGCGCGTGTGTGTGGTTGTCGGGTCAGGCCCTGCGCTCGACGGGCTGTTTTAGGCAAAC 475 consensus_1645#1 GCAATACTGGGGACTGCTATACTGTCACGTGTTTCTTTTCTCTTTGCTTTTTGACTCTTG 451 * ** * * * * **** * * * * * **** consensus_1645#0 TTCACTGCCGGCCGATATGATGGG--GAGCCGGTTGTCCATGTGGGAGCTGATCAGATGA 533 consensus_1645#1 TTGAACATTCAAAGTTGAGGAGGATCAAAACAGCTGCATATTCCTGTTTTC-TCTGTGAA 510 ** * * * * ** * * * ** ** * * ** * * consensus_1645#0 CTCACGCTTTCAAACCGATGATCCTTAGTACGAA-CCACTCCTTCTGGATCGACGAGAAG 592 consensus_1645#1 TGCAGATACACAAACGTGCACCAAAGAACACGAAACCTGTTCAAATACAGCAAAGAAAAC 570 ** ***** * ***** ** * * * * * * ** ** consensus_1645#0 CAGGTGCTTGGGCTGACCCCCCTGCTGCCCCGTCAGGACGTA-- 634 consensus_1645#1 CAGACGCGTCTTGTGATCTAACAAGCTGAGCGGCAAAATGGGAA 614 *** ** * *** * * ** ** * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |