These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 413 fasta sequence [TTTTTGATGGGGAGAAGGTTCAACACAGAACCCCATTAAAGCTCTTTTCCCGTGATACAAATGTTAAAACAGCATGCAGTGGCTTGGTTTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAGCAGAAATCAATCCCATTACAAGAGTTTGCATAACTTCCTCTCAGTGACATTACCACCCCCCTTCACAAAAAAGCAAAACAAAAAAAGCCCAGCCACATAGGCAGCAACTATGAAGCAGACGTGTTAAAAACAACATCCATGTAAATAAAAGGCAGAGTAATCGATGCGAGAAGCTGAGAGGCACAGAGACAATATCTGTTGGGTTGGCTGACGGAGCACCGTGCTCGCTCACACCGCCGGAGGCGATGACGTGCCGGATATGTCCAGAGATCACCTGA] [+] EMBL CA331142 [TTTTTGATGGGGAGAAGGTTCAACACAGAACTTTATTAAAGCTCTTTTCCCGTGATACAAATGTTAAAACAGCATGCAGTGGCTTGGTTTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAGCAGAAATCAATCCCATTACAAGAGTTTGCATAACTTCCTCTCAGTGACATTACCACCCCCCTTCACAAAAAAGCAAAACAAAAAAAGCCCAGTCACATAGTCAGCAACTATGAAGCAGACGTGTTAAAAACAACATCCATGTAAATAAAAGGCAGAGTAATCGATGCGAGAAGCTGAGAGGCACAGAGACAATATCTGTTGGGTTGGCTGACGGAGCACCGTGCTCGCTCACACCGCCGGAGGCGATGACGTGCCGGATATGTCCAGAGATCACCTGA] [+] EMBL CA329636 [ GGGAGAAGGTTCAACTTTTTTCCCCCTTAAAGCTCTTTTCCCGTGATACAAATGTTAAAACAGCATGCACTGGCTTGGTTTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAGCAGAAATCAATCCCATTACAAGAGTTTGCATAACTTCCTCTCAGTGACATTACCACCCCCCTTCACAAAAAAGCAAAACAAAAAAAGCCCAGCCACATTGGTAGTTACTATGAAGCAGACGTGTTAAAAACAACATCCATGTAAATAAAAGGCAGAGTAATCGATGCGAGAAGCTGAGAGGCACAGAGACAATATCTGTTGGGTTGGCTGACGGAGCACCGTGCTCGCTCACACCGCCGGAGGCGATGACGTGCCCGATATGTCCAGAGATCACCTG ] consensusID : consensus_1652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [GGCCCCAAATGGTGAAAGGGCCCCCCCCCGGGGGCAACACCTTTCCCCCTGATGGTGAGAAGGTTCAACACAGAACTTTATTAAAGCTCTTTTCCCGTGACACAAATGTTAAAACAGCATGCAGTGGCATGGTCTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAGTGCCGAATTCGGCACGAGCGCACACACACACACACACACGTGTGAATAAGTGGGCAGCACTCGTACTCACACATGGATGCAAACCTGGGTGGAAAAAGTAGCTGGAGAAGGACGGACTGAAGGCA] [-] EMBL FR0057957 [GGCCCCAAATGGTGAAAGGGCCCCCCCCCGGGGGCAACACCTTTCCCCCTGATGGTGAGAAGGTTCAACACAGAACTTTATTAAAGCTCTTTTCCCGTGACACAAATGTTAAAACAGCATGCAGTGGCATGGTCTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAGTGCCGAATTCGGCACGAGCGCACACACACACACACACACGTGTGAATAAGTGGGCAGCACTCGTACTCACACATGGATGCAAACCTGGGTGGAAAAAGTAGCTGGAGAAGGACGGACTGAAGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1652#0 ---------------------------------------------TTTTTGATGGGGAGA 15 consensus_1652#1 GGCCCCAAATGGTGAAAGGGCCCCCCCCCGGGGGCAACACCTTTCCCCCTGATGGTGAGA 60 ****** **** consensus_1652#0 AGGTTCAACACAGAACCCCATTAAAGCTCTTTTCCCGTGATACAAATGTTAAAACAGCAT 75 consensus_1652#1 AGGTTCAACACAGAACTTTATTAAAGCTCTTTTCCCGTGACACAAATGTTAAAACAGCAT 120 **************** ********************* ******************* consensus_1652#0 GCAGTGGCTTGGTTTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAG 135 consensus_1652#1 GCAGTGGCATGGTCTGAGGCACGTTACTACAGGGAGAAGGAACACTGAGCAGAAATAAAG 180 ******** **** ********************************************** consensus_1652#0 CA--GAAATCAATCCCATTACAAGAGTTTGCATAACTTCCTCTCAGTGACATTACCACCC 193 consensus_1652#1 TGCCGAATTCGGCACGAGCGCACACACACACACACACACGTGTGAATAAGTGGGCAGCAC 240 *** ** * * ** ** * * * * * * * * * * consensus_1652#0 CCCTTCACAAAAAAGCAAAACAAAAAAAGCCCAGCCACATAGGCAGCAACTATGAAGCAG 253 consensus_1652#1 TCGTACTCACACATG------GATGCAAACCTGG--GTGGAAAAAGTAGCTG-GAGAAGG 291 * * * ** * * * * ** ** * * ** * ** ** * consensus_1652#0 ACGTGTTAAAAACAACATCCATGTAAATAAAAGGCAGAGTAATCGATGCGAGAAGCTGAG 313 consensus_1652#1 ACGGACTGAAGGCA---------------------------------------------- 305 *** * ** ** consensus_1652#0 AGGCACAGAGACAATATCTGTTGGGTTGGCTGACGGAGCACCGTGCTCGCTCACACCGCC 373 consensus_1652#1 ------------------------------------------------------------ consensus_1652#0 GGAGGCGATGACGTGCCGGATATGTCCAGAGATCACCTGA 413 consensus_1652#1 ---------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |