These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 546 fasta sequence [TTAAAAGATCTTTATTATTTAATAACCTTCAACAAATATCTCCCTCTTTCTCTAATGAGTCTGAGCGAAGGAGTGGATCTGCAAGCAACAAGGCACCCTGAACGCATCACAGCGTCTGTTGTTGACGTGAGCGCAACGTGAAATAAATACAGATATGAAGGCGCGAGGAGCTAAGAATTATAGCAAAACTAATTGTTCAGTCAGGCGTAGGGAGAGAAGTGCTGTGAAAAGCTGATGTCTGTCGGAGTTAAAAGCTTTAAAGTGCTGGTAGATAGACTGAAATAAGATCATTTATGGAATCTCTCGGCGAGTAGTTTCCTTAGGTTTTACTGTGCCAGAGTTAGGAGTTCATCCTGGGCACTCTGAAGTTTATGTTATTGACTCTGAAGGCGTATCCAAAAGGCACATGTGGTAAACCTAATTTACACAACAGGGGATATAAAATAGATATATAATATCTCTATAAAAACAAACGTGAATATATTGCTTTAGCAAAACAGACTAGTTTGCTTCCTTTGACATAAGCATTCCTCCAGTACGACAGCT] [+] EMBL CA333005 [TTAAAAGATCTTTATTATTTAATAACCTTCAACAAATATCTCCCTCTTTCTCTAATGAGTCTGAGCGAAGGAGTGGATCTGCAAGCAACAAGGCACCCTGAACGCATCACAGCGTCTGTTGTTGACGTGAGCGCAACGTGAAATAAATACAGATATGAAGGCGCGAGGAGCTAAGAATTATAGCAAAACTAATTGTTCAGTCAGGCGTAGGGAGAGAAGTGCTGTGAAAAGCTGATGTCTGTCGGAGTTAAAAGCTTTAAAGTGCTGGTAGATAGACTGAAATAAGATCATTTATGGAATCTCTCGGCGAGTAGTTTCCTTAGGTTTTACTGTGCCAGAGTTAGGAGTTCATCCTGGGCACTCTGAAGTTTATGTTATTGACTCTGAAGGCGTATCCAAAAGGCACATGTGGTAAACCTAATTTACACAACAGGGGATATAAAATAGATATATAATATCTCTATAAAAACAAACGTGAATATATTGCTTTAGCAAAACAGACTAGTTTGCTTCCTTTGACATAAGCATTCCTCCAGTACGACAGCT] [+] EMBL CA331061 [TTAAAAGATCTTTATTATTTAATAACCTTCAACAAATATCTCCCTCTTTCTCTAATGAGTCTGAGCGAAGGAGTGGATCTGCAAGCAACAAGGCACCCTGAACGCATCACAGCGTCTGTTGTTGACGT ] consensusID : consensus_1657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 114 fasta sequence [AAAGAGGGAGATATTTGTTGAAGGTTATTAAATAATAAAGATCTTTTAAATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCCGGAACCAAATTTTGGCC] [+] EMBL FR0056615 [AAAGAGGGAGATATTTGTTGAAGGTTATTAAATAATAAAGATCTTTTAAATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCCGGAACCAAATTTTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1657#0 TTAAAAGATCTTTATTATTTAATAACCTTCAACAAATATCTCCCTCTTTCTCTAATGAGT 60 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 CTGAGCGAAGGAGTGGATCTGCAAGCAACAAGGCACCCTGAACGCATCACAGCGTCTGTT 120 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 GTTGACGTGAGCGCAACGTGAAATAAATACAGATATGAAGGCGCGAGGAGCTAAGAATTA 180 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 TAGCAAAACTAATTGTTCAGTCAGGCGTAGGGAGAGAAGTGCT-GTGAAAAGCTGATGTC 239 consensus_1657#1 ----------------------------AAAGAGGGAGATATTTGTTGAAGGTTATTAAA 32 * *** ** * * ** ** * * * consensus_1657#0 TGTCGGAGTTAAAAGCTTTAAAGTGCTGGTAGATAGACTGAAATAAGATCATTTATGGAA 299 consensus_1657#1 T-----AATAAAGATCTTTTAAATGTTAAAAAAAAAAAAAAAAAAAAA------AAAAAA 81 * * * ** * **** ** ** * * * * * *** ** * * ** consensus_1657#0 TCTCTCGGCGAGTAGTTTCCTTAGGTTTTACTGTGCCAGAGTTAGGAGTTCATCCTGGGC 359 consensus_1657#1 CCCCGGGGGGGGCCCCGGAACCAAATTTTGGCC--------------------------- 114 * * ** * * * **** consensus_1657#0 ACTCTGAAGTTTATGTTATTGACTCTGAAGGCGTATCCAAAAGGCACATGTGGTAAACCT 419 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 AATTTACACAACAGGGGATATAAAATAGATATATAATATCTCTATAAAAACAAACGTGAA 479 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 TATATTGCTTTAGCAAAACAGACTAGTTTGCTTCCTTTGACATAAGCATTCCTCCAGTAC 539 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 GACAGCT 546 consensus_1657#1 ------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |