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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 546 fasta sequence
[TTAAAAGATCTTTATTATTTAATAACCTTCAACAAATATCTCCCTCTTTCTCTAATGAGTCTGAGCGAAGGAGTGGATCTGCAAGCAACAAGGCACCCTGAACGCATCACAGCGTCTGTTGTTGACGTGAGCGCAACGTGAAATAAATACAGATATGAAGGCGCGAGGAGCTAAGAATTATAGCAAAACTAATTGTTCAGTCAGGCGTAGGGAGAGAAGTGCTGTGAAAAGCTGATGTCTGTCGGAGTTAAAAGCTTTAAAGTGCTGGTAGATAGACTGAAATAAGATCATTTATGGAATCTCTCGGCGAGTAGTTTCCTTAGGTTTTACTGTGCCAGAGTTAGGAGTTCATCCTGGGCACTCTGAAGTTTATGTTATTGACTCTGAAGGCGTATCCAAAAGGCACATGTGGTAAACCTAATTTACACAACAGGGGATATAAAATAGATATATAATATCTCTATAAAAACAAACGTGAATATATTGCTTTAGCAAAACAGACTAGTTTGCTTCCTTTGACATAAGCATTCCTCCAGTACGACAGCT]
[+] EMBL CA333005 [TTAAAAGATCTTTATTATTTAATAACCTTCAACAAATATCTCCCTCTTTCTCTAATGAGTCTGAGCGAAGGAGTGGATCTGCAAGCAACAAGGCACCCTGAACGCATCACAGCGTCTGTTGTTGACGTGAGCGCAACGTGAAATAAATACAGATATGAAGGCGCGAGGAGCTAAGAATTATAGCAAAACTAATTGTTCAGTCAGGCGTAGGGAGAGAAGTGCTGTGAAAAGCTGATGTCTGTCGGAGTTAAAAGCTTTAAAGTGCTGGTAGATAGACTGAAATAAGATCATTTATGGAATCTCTCGGCGAGTAGTTTCCTTAGGTTTTACTGTGCCAGAGTTAGGAGTTCATCCTGGGCACTCTGAAGTTTATGTTATTGACTCTGAAGGCGTATCCAAAAGGCACATGTGGTAAACCTAATTTACACAACAGGGGATATAAAATAGATATATAATATCTCTATAAAAACAAACGTGAATATATTGCTTTAGCAAAACAGACTAGTTTGCTTCCTTTGACATAAGCATTCCTCCAGTACGACAGCT]
[+] EMBL CA331061 [TTAAAAGATCTTTATTATTTAATAACCTTCAACAAATATCTCCCTCTTTCTCTAATGAGTCTGAGCGAAGGAGTGGATCTGCAAGCAACAAGGCACCCTGAACGCATCACAGCGTCTGTTGTTGACGT ]
consensusID : consensus_1657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 114 fasta sequence
[AAAGAGGGAGATATTTGTTGAAGGTTATTAAATAATAAAGATCTTTTAAATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCCGGAACCAAATTTTGGCC]
[+] EMBL FR0056615 [AAAGAGGGAGATATTTGTTGAAGGTTATTAAATAATAAAGATCTTTTAAATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCCGGAACCAAATTTTGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1657#0 TTAAAAGATCTTTATTATTTAATAACCTTCAACAAATATCTCCCTCTTTCTCTAATGAGT 60
consensus_1657#1 ------------------------------------------------------------
consensus_1657#0 CTGAGCGAAGGAGTGGATCTGCAAGCAACAAGGCACCCTGAACGCATCACAGCGTCTGTT 120
consensus_1657#1 ------------------------------------------------------------
consensus_1657#0 GTTGACGTGAGCGCAACGTGAAATAAATACAGATATGAAGGCGCGAGGAGCTAAGAATTA 180
consensus_1657#1 ------------------------------------------------------------
consensus_1657#0 TAGCAAAACTAATTGTTCAGTCAGGCGTAGGGAGAGAAGTGCT-GTGAAAAGCTGATGTC 239
consensus_1657#1 ----------------------------AAAGAGGGAGATATTTGTTGAAGGTTATTAAA 32
* *** ** * * ** ** * * *
consensus_1657#0 TGTCGGAGTTAAAAGCTTTAAAGTGCTGGTAGATAGACTGAAATAAGATCATTTATGGAA 299
consensus_1657#1 T-----AATAAAGATCTTTTAAATGTTAAAAAAAAAAAAAAAAAAAAA------AAAAAA 81
* * * ** * **** ** ** * * * * * *** ** * * **
consensus_1657#0 TCTCTCGGCGAGTAGTTTCCTTAGGTTTTACTGTGCCAGAGTTAGGAGTTCATCCTGGGC 359
consensus_1657#1 CCCCGGGGGGGGCCCCGGAACCAAATTTTGGCC--------------------------- 114
* * ** * * * ****
consensus_1657#0 ACTCTGAAGTTTATGTTATTGACTCTGAAGGCGTATCCAAAAGGCACATGTGGTAAACCT 419
consensus_1657#1 ------------------------------------------------------------
consensus_1657#0 AATTTACACAACAGGGGATATAAAATAGATATATAATATCTCTATAAAAACAAACGTGAA 479
consensus_1657#1 ------------------------------------------------------------
consensus_1657#0 TATATTGCTTTAGCAAAACAGACTAGTTTGCTTCCTTTGACATAAGCATTCCTCCAGTAC 539
consensus_1657#1 ------------------------------------------------------------
consensus_1657#0 GACAGCT 546
consensus_1657#1 -------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |