cluster # 1663

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Takifugu rubripes
cluster # 1663 cluster # 1663 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1663#0 length = 394 sequences # 2

consensus_1663#1 length = 261 sequences # 1

consensusID : consensus_1663#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 394
fasta sequence

                              [TTTCGCTGTCGAGGGCAAACTGGTGCTCCCTACTGGTCTGAAG-NTCGTGATTGGACTGAGATTCTGAGATCCTGCCGCTCTGTTGCGAGAGTGGGAGACGGCTCAGTGCTGAGACAGCTGAGCGCCGGGAGGAAGAGCCGCCATGAGTCTAAACAGCAGCCAACCTCTGACCATCAGTGGACAGGACCTGATCAGCAGCAGCAGCAGCAGCGGAGCACCAGGGGAGGATGCTCGAGCAACTTCGATGCCTTGCACCCCCACCAGGAAACCGAAGCCTCCAAAGCCAGAGAATGCCATCACCATCGCGGGGTCATCGCGGGTCCTCTTTAACATGGAGAAGGAGCAGCACATCTATGAACACCAAAGGATGGGGCATCAGATGGAGCACGAAAGC]

[+] EMBL FR0061516            [TTTCGCTGTCGAGGGCAAACTGGTGCTCCCTACTGGTCTGAAGTTTCCTCATTGGACTGAGATTCTGAGATCCTGTTGCTCTGTTGCGAGAGTGCCACACGGCTCAGTGCTGAGACAGCTGAGCGCCGGGAGGAAGAGCCGCCATGAGTCTAAACAGCAGCCAACCTCTGACCATCAGTGGACAGGACCTGATCAGCAGCAGCAGCAGCAGCGGAGCACCAGGGGAGGATGCTCGAGCAACTTCGATGCCTTGCACCCCCACCAGGAAACCGAAGCCTCCAAAGCCAGAGAATGCCATCACCATCGCGGTGTCATCGCGGGT                                                                         ]
[+] EMBL FR0058757            [                                      TGAAG NTCGTGATTGTACTGAGATTCTCAGATCCTGCCGCTCTGTTGCGAGAGTGGGAGACGGCTCAGTGCTGAGACAGCTGAGCGCCGGGAGGAAGAGCCGCCATGAGTCTAAACAGCAGCCAACCTCTGACCATCAGTGGACAGGACCTGATCAGCAGCAGCAGCAGCAGCGGAGCACCAGGGGAGGATGCTCGAGCAACTTCGATGCCTTGCACCCCCACCAGGAAACCGAAGCCTTCAAAGCCAGAGAATGCCATCACCATCGCGGGGTCATCGCGGGTCCTCTTTAACATGGAGAAGGAGCAGCACATCTATGAACACCAAAGGATGGGGCATCAGATGGAGCACGAAAGC]




>consensus_1663#0
TTTCGCTGTCGAGGGCAAACTGGTGCTCCCTACTGGTCTGAAGNTCGTGATTGGACTGAG
ATTCTGAGATCCTGCCGCTCTGTTGCGAGAGTGGGAGACGGCTCAGTGCTGAGACAGCTG
AGCGCCGGGAGGAAGAGCCGCCATGAGTCTAAACAGCAGCCAACCTCTGACCATCAGTGG
ACAGGACCTGATCAGCAGCAGCAGCAGCAGCGGAGCACCAGGGGAGGATGCTCGAGCAAC
TTCGATGCCTTGCACCCCCACCAGGAAACCGAAGCCTCCAAAGCCAGAGAATGCCATCAC
CATCGCGGGGTCATCGCGGGTCCTCTTTAACATGGAGAAGGAGCAGCACATCTATGAACA
CCAAAGGATGGGGCATCAGATGGAGCACGAAAGC

consensusID : consensus_1663#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [CTGNCGGCNGGCAAACTGGGGCTCCCTACTNGTCTCAAGTTTCCTCATTGGACTGAGACAGCTGAGCGCCGGGAGGAAGAGCCGCCATGAGTCTAAACAGCAGCCAACCTCTGACCATCAGTGGACAGGACCTGATCAGCAGCAGCAGCAGCAGCGGACGACCAGGGGAGGATGCTCGAGCAACTTCGATGCCTTGCACCCCCACCAGGAAACCGAAGCCTCCAAAGCCAGAGAATGCCATCACCATCGCGGGGGCATCGC]

[+] EMBL FR0062078            [CTGNCGGCNGGCAAACTGGGGCTCCCTACTNGTCTCAAGTTTCCTCATTGGACTGAGACAGCTGAGCGCCGGGAGGAAGAGCCGCCATGAGTCTAAACAGCAGCCAACCTCTGACCATCAGTGGACAGGACCTGATCAGCAGCAGCAGCAGCAGCGGACGACCAGGGGAGGATGCTCGAGCAACTTCGATGCCTTGCACCCCCACCAGGAAACCGAAGCCTCCAAAGCCAGAGAATGCCATCACCATCGCGGGGGCATCGC]




>consensus_1663#1
CTGNCGGCNGGCAAACTGGGGCTCCCTACTNGTCTCAAGTTTCCTCATTGGACTGAGACA
GCTGAGCGCCGGGAGGAAGAGCCGCCATGAGTCTAAACAGCAGCCAACCTCTGACCATCA
GTGGACAGGACCTGATCAGCAGCAGCAGCAGCAGCGGACGACCAGGGGAGGATGCTCGAG
CAACTTCGATGCCTTGCACCCCCACCAGGAAACCGAAGCCTCCAAAGCCAGAGAATGCCA
TCACCATCGCGGGGGCATCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1663#0      TTTCGCTGTCGAGGGCAAACTGGTGCTCCCTACTGGTCTGAAGNTCGTGATTGGACTGAG 60
consensus_1663#1      -------------------------------------------------------CTGNC 5
                                                                             ***  

consensus_1663#0      ATTCTGAGATCCTGCCGCTCTGTTGCGAGAGTGGGAGACGGCTCAGTGCTGAGACAGCTG 120
consensus_1663#1      GG-CNGGCAAACTGGGGCTCCCTACTNGTCTCAAGTTTCCTCATTGGACTGAGACAGCTG 64
                         * *  *  ***  ****  *           *   *  *   *  ************

consensus_1663#0      AGCGCCGGGAGGAAGAGCCGCCATGAGTCTAAACAGCAGCCAACCTCTGACCATCAGTGG 180
consensus_1663#1      AGCGCCGGGAGGAAGAGCCGCCATGAGTCTAAACAGCAGCCAACCTCTGACCATCAGTGG 124
                      ************************************************************

consensus_1663#0      ACAGGACCTGATCAGCAGCAGCAGCAGCAGCGGAGCACCAGGGGAGGATGCTCGAGCAAC 240
consensus_1663#1      ACAGGACCTGATCAGCAGCAGCAGCAGCAGCGGACGACCAGGGGAGGATGCTCGAGCAAC 184
                      **********************************  ************************

consensus_1663#0      TTCGATGCCTTGCACCCCCACCAGGAAACCGAAGCCTCCAAAGCCAGAGAATGCCATCAC 300
consensus_1663#1      TTCGATGCCTTGCACCCCCACCAGGAAACCGAAGCCTCCAAAGCCAGAGAATGCCATCAC 244
                      ************************************************************

consensus_1663#0      CATCGCGGGGTCATCGCGGGTCCTCTTTAACATGGAGAAGGAGCAGCACATCTATGAACA 360
consensus_1663#1      CATCGCGGGGGCATCGC------------------------------------------- 261
                      ********** ******                                           

consensus_1663#0      CCAAAGGATGGGGCATCAGATGGAGCACGAAAGC 394
consensus_1663#1      ----------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)