These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 602 fasta sequence [TTTTTTTTTTTTTTTTTTAGGAGGGGATCTGTGGAGTTAGCTGCTGTTGTCAGACACCACAACTGGTTTATTTTCAGAACGCTCTCAATCTGGAACAAACACAATCAGGCAAACGGCGTCTCAACTCCGGTCGAATCCAAACTACTTCTTCTCGTGACACAAGCAATTATGCTCCATTATTGAGTGGACTTCAATTCCTCATCAGACACTGTGTGTGAGTTTTCCCCACTCAGGCGCTCCTGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCCACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATGCCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTGTACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATCTTTGATTGGTACGAATGGACCCTTACGAACTCCTGAGTCTCGGGGACTCTGGGGTGCTGCACAGCTCTGGACACCAGGATCATCAGGTTGTTGTCGACATCAACATCATAGCGGCGAACATA] [+] EMBL CA331310 [TTTTTTTTTTTTTTTTTTAGGAGGGGATCTGTGGAGTTAGCTGCTGTTGTCAGACACCACAACTGGTTTATTTTCAGAACGCTCTCAATCTGGAACAAACACAATCAGGCAAACGGCGTCTCAACTCCGGTCGAATCCAAACTACTTCTTCTCGTGACACAAGCAATTATGCTCCATTATTGAGTGGACTTCAATTCCTCATCAGACACTGTGTGTGAGTTTTCCCCACTCAGGCGCTCCTGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCCACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATGCCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTGTACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATCTTTGATTGGTACGAATGGACCCTTACGAACTCCTGAGTCTCGGGGACTCTGGGGTGCTGCACAGCTCTGGACACCAGGATCATCAGGTTGTTGTCCACATCAACATCATAGCGGCGAACATA] [+] EMBL CA329750 [ TCCGGCATGCCGCTCGACACCATCCAGCTCACGCAGTAACGAGGAAAGACCGTCTGAGGATTGTCACTGTACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATCTTTGATTGGTACCAATGGACCCTTACGAACTCCTGAGTCTCGGGGACTCTGGGGTGCTGCACAGCTCTGGACACCAAGATCATCAGGTTGTTGTCGACATCAACATCATAGCGTCGAACATA] consensusID : consensus_1673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [ATGAATGACAAACTGTACCATCTAATGTAGGCAGCAACTTCATCTCGCTACACAATGTACCAAAAGGTTGGCCGGACGGTTTAAATAGGGCGTAAGTGCCAATGCTAACGCGACCACAGATACTCCCGGCGGTGGCGACCTCACGCGTAGATCTGTCCTGAACCACCTGTGTGTGAGTTTTCCCCACTCAGGCGCTCCTGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCCACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATGCCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTGTACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATCTTTGATTGGTACGAATGGACCCTTACAAACTCCTGAGTCTCGGGGACTCTGGGGGTGCTGCACCACTCTGGACACCAGGATCATCAGGTTGNTGTCGACATCAACATCATAGCGTCGAACATA] [+] EMBL CA329560 [ATGAATGACAAACTGTACCATCTAATGTAGGCAGCAACTTCATCTCGCTACACAATGTACCAAAAGGTTGGCCGGACGGTTTAAATAGGGCGTAAGTGCCAATGCTAACGCGACCACAGATACTCCCGGCGGTGGCGACCTCACGCGTAGATCTGTCCTGAACCACCTGTGTGTGAGTTTTCCCCACTCAGGCGCTCCTGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCCACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATGCCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTGTACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATCTTTGATTGGTACGAATGGACCCTTACAAACTCCTGAGTCTCGGGGACTCTGGGGGTGCTGCACCACTCTGGACACCAGGATCATCAGGTTGNTGTCGACATCAACATCATAGCGTCGAACATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1673#0 TTTTTTTTTTTTTTTTTTAGGAGGGGATCTGTGGAGTTAGCTGCTGTTGTCAGACACCAC 60 consensus_1673#1 ----------------ATGAATGACAAACTGTA---CCATCTAATGTAGGCAGCAACTTC 41 * * * **** * ** *** * *** ** * consensus_1673#0 AACTGGTTTATTTTCAGAACGCTCTCAATCTGGAACAAACACAATCAGGCAAACGGCGTC 120 consensus_1673#1 ATCTCGCTA-----CACAATGTACCAAA----AGGTTGGCCGGACGGTTTAAATAGGGCG 92 * ** * * ** ** * * ** * * *** * * consensus_1673#0 TCAACTCCGGTCGAATCCAAACTACTTCTTCTCGTGACACAAGCAATTATGCTCCATTAT 180 consensus_1673#1 TAAGTGCCAATGCTAACGCGACCACAGATACTCCCGGCGGTGGCGACCTCACGC------ 146 * * ** * * * ** ** * *** * * ** * * * consensus_1673#0 TGAGTGGACTTCAATTCCTCATCAGACACTGTGTGTGAGTTTTCCCCACTCAGGCGCTCC 240 consensus_1673#1 ---GTAGATCT--GTCCTGAACCAC---CTGTGTGTGAGTTTTCCCCACTCAGGCGCTCC 198 ** ** * * * * ** ******************************** consensus_1673#0 TGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCC 300 consensus_1673#1 TGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCC 258 ************************************************************ consensus_1673#0 ACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATG 360 consensus_1673#1 ACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATG 318 ************************************************************ consensus_1673#0 CCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTG 420 consensus_1673#1 CCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTG 378 ************************************************************ consensus_1673#0 TACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATC 480 consensus_1673#1 TACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATC 438 ************************************************************ consensus_1673#0 TTTGATTGGTACGAATGGACCCTTACGAACTCCTGAGTCTCGGGGACTCTGGGG-TGCTG 539 consensus_1673#1 TTTGATTGGTACGAATGGACCCTTACAAACTCCTGAGTCTCGGGGACTCTGGGGGTGCTG 498 ************************** *************************** ***** consensus_1673#0 CACAGCTCTGGACACCAGGATCATCAGGTTGTTGTCGACATCAACATCATAGCGGCGAAC 599 consensus_1673#1 CACCACTCTGGACACCAGGATCATCAGGTTGNTGTCGACATCAACATCATAGCGTCGAAC 558 *** ************************** ********************** ***** consensus_1673#0 ATA 602 consensus_1673#1 ATA 561 *** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |