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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 596 fasta sequence
[TTGCTGGCTCTGCTCTCCGTTGGCTTGTGCGAGGAGAAGACGTTTCTGCAGCGTGCTGGCACAGCCTTCAACAGCAGATCCTACAAATCCATCCTCAGCGTCACCAATGGAGAGAAGTTTGGAGACTGGACATGGCCCGAGATGAGTCCTGAAACCTTCTACGCAGTTGGCTTCAGTCTCAGGGTGGAGTCCAACCAGTTTGGCATGGACGATACCGCCCTGAACGGCATCCGCCTCATTTGTGCCCAAGACGGGGACAGAAGCTTCCTGTACTCCATTGAATCTCACACTGGCTACTTTGGTGAGTGGTCCCACAGCATGTACTGCCCCTCCGGCTACCTCACCTCCTTCCAGATCCGCGTGGAGCCCCATCAGGGTCTGTTCGGCGACGACACGGCGGTCAACAACATCAAGTTCCGCTGCAGCAGCAACCCGATGCTGGAGGGACCCGGCATGTCCTGGGGGGAGTACGGCCAGTGGAGCCAGGAATGCCAGGACGNGGGGATCTGTGGTATTGAGAGCAAGATGGAGGCGTACCAGTACGGCCTTGACGACAGCACCCTCAACGACGTCCGCTTCCACTGGTGCTCCGTGCC]
[+] EMBL FR0057914 [TTGCTGGCTCTGCTCTCCGTTGGCTTGTGCGAGGAGAAGACGTTTCTGCAGCGTGCTGGCACAGCCTTCAACAGCAGATCCTACAAATCCATCCTCAGCGTCACCAATGGAGAGAAGTTTGGAGACTGGACATGGCCCGAGATGTGTCCTGAAACCTTCTACGCAGTTGGCTTCAGTCTCAGGGTGGAGTCCAACCAGTTTGGCATGGACGATACCGCCCTGAACGGCATCCGCCTCATTTGTGCCCAAGACGGAGACAGAAGCTTCCTGTACTCCATTGAATCTCACACTGGCTACTTTGGTGAGTGGTCCCACAGCATGTACTGCCCCTCCGGCTACCTCACCTCCTTCCAGATCCGCGTGGAGCCCCATCAGGGTCTGTTCGGCGACGACACGGCGGTCAACAACATCAAGTTCCGCTGCAGCAGCAACCCGATGCTGGAGGGACCCGGCATGTCCTGGGGGGAGTACGGCCAGTGGAGCCAGGAATGCCAGGACGNGGGGATCTGTGGTATTGAGAGCAAGAT ]
[+] EMBL FR0057856 [ ATGAGTCCTGAAACCTTCTACGCAGTTGGCTTCAGTCTCAGGGTGGAGTCCAACCAGTTTGGCATGGACGATACCGCCCTGAACGGCATCCGCCTCATTTGTGCCCAAGACGGGGACAGAAGCTTCCTGTACTCCATTGAATCTCACACTGGCTACTTTGGTGAGTGGTCCCACAGCATGTACTGCCCCTCCGGCTACCTCACCTCCTTCCAGATCCGCGTGGAGCCCCATCAGGGTCTGTTCGGCGACGACACGGCGGTCAACAACATCAAGTTCCGCTGCAGCAGCAACCCGATGCTGGAGGGACCCGGCATGTCCTGGGGGGAGTACGGCCAGTGGAGCCAGGAATGCCAGGACGGGGGGATCTGTGGTATTGAGAGCAAGATGGAGGCGTACCAGTACGGCCTTGACGACAGCACCCTCAACGACGTCCGCTTCCACTGGTGCTCCGTGCC]
consensusID : consensus_1677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence
[AGCACCCTCAACGACGTCCGCTTCCACTGCTGCTCCGTGCCACAGAAGGTGGGAGGGACGGCTGATTAGGAAGATGTGAGCAGCGGTTCAATGTCAGAGAGGTGAGCAGCGTGATCCAGGCTACGACAATCAGCCGTAACCAAGAAAAAGAACCTTTTTTATAAGGAAA]
[+] EMBL CA330983 [AGCACCCTCAACGACGTCCGCTTCCACTGCTGCTCCGTGCCACAGAAGGTGGGAGGGACGGCTGATTAGGAAGATGTGAGCAGCGGTTCAATGTCAGAGAGGTGAGCAGCGTGATCCAGGCTACGACAATCAGCCGTAACCAAGAAAAAGAACCTTTTTTATAAGGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1677#0 TTGCTGGCTCTGCTCTCCGTTGGCTTGTGCGAGGAGAAGACGTTTCTGCAGCGTGCTGGC 60
consensus_1677#1 ------------------------------------------------------------
consensus_1677#0 ACAGCCTTCAACAGCAGATCCTACAAATCCATCCTCAGCGTCACCAATGGAGAGAAGTTT 120
consensus_1677#1 ------------------------------------------------------------
consensus_1677#0 GGAGACTGGACATGGCCCGAGATGAGTCCTGAAACCTTCTACGCAGTTGGCTTCAGTCTC 180
consensus_1677#1 ------------------------------------------------------------
consensus_1677#0 AGGGTGGAGTCCAACCAGTTTGGCATGGACGATACCGCCCTGAACGGCATCCGCCTCATT 240
consensus_1677#1 ------------------------------------------------------------
consensus_1677#0 TGTGCCCAAGACGGGGACAGAAGCTTCCTGTACTCCATTGAATCTCACACTGGCTACTTT 300
consensus_1677#1 ------------------------------------------------------------
consensus_1677#0 GGTGAGTGGTCCCACAGCATGTACTGCCCCTCCGGCTACCTCACCTCCTTCCAGATCCGC 360
consensus_1677#1 ------------------------------------------------------------
consensus_1677#0 GTGGAGCCCCATCAGGGTCTGTTCGGCGACGACACGGCGGTCAACAACATCAAGTTCCGC 420
consensus_1677#1 ---------------------------------AGCACCCTCAACGACGTCCGCTTCCAC 27
* * ***** ** ** **** *
consensus_1677#0 TGCAGCAGCAACCCGATGCTGGAGGGACCCGGCATGTCCTGGGGGGAGTACGGCCAGTGG 480
consensus_1677#1 TGCTGCTCCGTGCCACAGAAGGTGGGAGG-GACGGCTGATTAGGAAGATGTGAGCAGCGG 86
*** ** * ** * ** **** * * * * ** * * *** **
consensus_1677#0 AGCCAGGAATGCCAGGACGNGGGGATCTGTGGTATTGAGAGCAAGATGGAGGCGTACCAG 540
consensus_1677#1 TTC----AATGTCAGAGAGGTGAGCAGCGTGATCCAGGCTACGACAATCAGCCGTAACCA 142
* **** *** * * * *** * * * * * ** **** *
consensus_1677#0 TACGGCCTTGACGACAGCACCCTCAACGACGTCCGCTTCCACTGGTGCTCCGTGCC 596
consensus_1677#1 AGAAA----AAGAACCTTTTTTATAAGGAAA------------------------- 169
* ** ** **
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |