These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [ATCAATAAAGAAGAAAACAAGCTGGAAAACGATGTCAGATATTTTAGAGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAATCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGTTTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGGGGAAAAAACTGAAGGGAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGGTGACAGAGAAAACTACCTTGGATAAAAAGAGGAAACTTGATCCAAATACAACAGAACAAACAGAAGCAGGAGGTTCACGTCCTGTGATGGCTAAAGGAATATTGGCTGGCCAACCTGCCACAGAGACAGACACTGCTTCTTGGAGCAAGTCCATCTGTGATTTGGTAGCGGCCCATGAGGTCGTTGCCACAGCCACCATCCGGGGAAGAATCATGGACAAATCTAAACTGCAGACATACAAAACCCAGAAAAAAGATTTCTTCTTTTTGTTAGTCACAGATGAGACAGCCAGCATTAAAATGATGGTGTATGGAAAACCACA] [+] EMBL CA588531 [ATCAATAAAGAAGAAAACAAGCTGGAAAACGATGTCAGATATTTTCTTGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAATCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGTTTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGTGG AAAAACTGAAGGCAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGTTGACATAGAAAACTACCTTGGATAAAAAGAGGAAACTTGATCCAAATACAACAGAACAAACAGAAGCAGGAGGTTCACGTCCTGTGATGGCTAAAGGAATATTGGCTGGCCAACCTGCCACAGAGACAGACACTGCTTCTTGGAGCAAGTCCATCTGTGATTTGGTAGCGGCCCATGAGGTCGTTGCCACAGCCACCATCCGGGGAAGAATCATGGACAAATCTAAACTGCAGACATACAAAACCCAGAAAAAAGATTTCTTCTTTTTGTTAGTCACAGATGAGACAGCCAGCATTAAAATGATGGTGTATGGAAAACCACA] [+] EMBL FR0058805 [ ATGTCAGATATTTTAGAGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAATCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGTTTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGGGGAAAAAACTGAAGGGCAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGGTGACAGAGAAAA ] consensusID : consensus_1686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [ATCTGTAGACATCAACCTCTACCTTCTTTAAACGGACTACAAAATTCTTCACCTGTGACGAAAAAAAAAAAAATCATTTTGCTGGCTGATCGCAATCATTCAAATTCCGAAGATGTCAGATATTTTAGAGAAGGGGGGGAAACAAACTCTTACCTTCATTGGGGAGGAGTGGGACAATCAACAGTTGGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGCCTGGAAGATTCTGCTTTTGCCATTGTGGAGGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGTGGAAAAACTGAGGGCAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGTTGACAGAGAAAA] [+] EMBL FR0058575 [ATCTGTAGACATCAACCTCTACCTTCTTTAAACGGACTACAAAATTCTTCACCTGTGACGAAAAAAAAAAAAATCATTTTGCTGGCTGATCGCAATCATTCAAATTCCGAAGATGTCAGATATTTTAGAGAAGGGGGGGAAACAAACTCTTACCTTCATTGGGGAGGAGTGGGACAATCAACAGTTGGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGCCTGGAAGATTCTGCTTTTGCCATTGTGGAGGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGTGGAAAAACTGAGGGCAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGTTGACAGAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1686#0 ------------------------------------------------------------ consensus_1686#1 ATCTGTAGACATCAACCTCTACCTTCTTTAAACGGACTACAAAATTCTTCACCTGTGACG 60 consensus_1686#0 ------------------------ATCAATAAAGAAGAAAACAAGCTGGAAAACGATGTC 36 consensus_1686#1 AAAAAAAAAAAAATCATTTTGCTGGCTGATCGC-AATCATTCAAATTCCGAA--GATGTC 117 ** ** * *** * ** ****** consensus_1686#0 AGATATTTTAGAGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAA 96 consensus_1686#1 AGATATTTTAGAGAAGGGGGGGAAACAAACTCTTACCTTCATTGGGGAGGAGTGGGACAA 177 ***************** * ************************ ******** ****** consensus_1686#0 TCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCC 156 consensus_1686#1 TCAACAGTTGGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCC 237 ********* ************************************************** consensus_1686#0 TAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGT 216 consensus_1686#1 TAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGCCTGGAAGATTCTGC 297 ********************************************* ** ********** consensus_1686#0 TTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACC 276 consensus_1686#1 TTTTGCCATTGTGGAGGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACC 357 ************ ** ******************************************** consensus_1686#0 ATTAAAAGCTTTTGGGGAAAAAACTGAAGGGAAATACAGGTAAAAAGAGGAAAAGAAACC 336 consensus_1686#1 ATTAAAAGCTTTTGTGGAAAAA-CTGAGGGCAAATACAGGTAAAAAGAGGAAAAGAAACC 416 ************** ******* **** ** ***************************** consensus_1686#0 CAGTCCAGGTGACAGAGAAAACTACCTTGGATAAAAAGAGGAAACTTGATCCAAATACAA 396 consensus_1686#1 CAGTCCAGTTGACAGAGAAAA--------------------------------------- 437 ******** ************ consensus_1686#0 CAGAACAAACAGAAGCAGGAGGTTCACGTCCTGTGATGGCTAAAGGAATATTGGCTGGCC 456 consensus_1686#1 ------------------------------------------------------------ consensus_1686#0 AACCTGCCACAGAGACAGACACTGCTTCTTGGAGCAAGTCCATCTGTGATTTGGTAGCGG 516 consensus_1686#1 ------------------------------------------------------------ consensus_1686#0 CCCATGAGGTCGTTGCCACAGCCACCATCCGGGGAAGAATCATGGACAAATCTAAACTGC 576 consensus_1686#1 ------------------------------------------------------------ consensus_1686#0 AGACATACAAAACCCAGAAAAAAGATTTCTTCTTTTTGTTAGTCACAGATGAGACAGCCA 636 consensus_1686#1 ------------------------------------------------------------ consensus_1686#0 GCATTAAAATGATGGTGTATGGAAAACCACA 667 consensus_1686#1 ------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |