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Takifugu rubripes
cluster # 1686 cluster # 1686       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1686#0 length = 667 sequences # 2  
consensus_1686#1 length = 437 sequences # 1  

consensusID : consensus_1686#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 667
fasta sequence
                              [ATCAATAAAGAAGAAAACAAGCTGGAAAACGATGTCAGATATTTTAGAGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAATCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGTTTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGGGGAAAAAACTGAAGGGAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGGTGACAGAGAAAACTACCTTGGATAAAAAGAGGAAACTTGATCCAAATACAACAGAACAAACAGAAGCAGGAGGTTCACGTCCTGTGATGGCTAAAGGAATATTGGCTGGCCAACCTGCCACAGAGACAGACACTGCTTCTTGGAGCAAGTCCATCTGTGATTTGGTAGCGGCCCATGAGGTCGTTGCCACAGCCACCATCCGGGGAAGAATCATGGACAAATCTAAACTGCAGACATACAAAACCCAGAAAAAAGATTTCTTCTTTTTGTTAGTCACAGATGAGACAGCCAGCATTAAAATGATGGTGTATGGAAAACCACA]

[+] EMBL CA588531             [ATCAATAAAGAAGAAAACAAGCTGGAAAACGATGTCAGATATTTTCTTGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAATCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGTTTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGTGG AAAAACTGAAGGCAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGTTGACATAGAAAACTACCTTGGATAAAAAGAGGAAACTTGATCCAAATACAACAGAACAAACAGAAGCAGGAGGTTCACGTCCTGTGATGGCTAAAGGAATATTGGCTGGCCAACCTGCCACAGAGACAGACACTGCTTCTTGGAGCAAGTCCATCTGTGATTTGGTAGCGGCCCATGAGGTCGTTGCCACAGCCACCATCCGGGGAAGAATCATGGACAAATCTAAACTGCAGACATACAAAACCCAGAAAAAAGATTTCTTCTTTTTGTTAGTCACAGATGAGACAGCCAGCATTAAAATGATGGTGTATGGAAAACCACA]
[+] EMBL FR0058805            [                               ATGTCAGATATTTTAGAGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAATCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGTTTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGGGGAAAAAACTGAAGGGCAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGGTGACAGAGAAAA                                                                                                                                                                                                                                                                                                                      ]


>consensus_1686#0 ATCAATAAAGAAGAAAACAAGCTGGAAAACGATGTCAGATATTTTAGAGAAGGAGTGGAA ACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAATCAACAGTTTGAAAAACTGCTGGA ACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCA AATAATTAATGAGCACTATGGTCTTGAAGATTCTGTTTTTGCCATTGTTGATGCCATGGA AACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGGGGAAAAAAC TGAAGGGAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGGTGACAGAGAAAACTA CCTTGGATAAAAAGAGGAAACTTGATCCAAATACAACAGAACAAACAGAAGCAGGAGGTT CACGTCCTGTGATGGCTAAAGGAATATTGGCTGGCCAACCTGCCACAGAGACAGACACTG CTTCTTGGAGCAAGTCCATCTGTGATTTGGTAGCGGCCCATGAGGTCGTTGCCACAGCCA CCATCCGGGGAAGAATCATGGACAAATCTAAACTGCAGACATACAAAACCCAGAAAAAAG ATTTCTTCTTTTTGTTAGTCACAGATGAGACAGCCAGCATTAAAATGATGGTGTATGGAA AACCACA



consensusID : consensus_1686#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence
                              [ATCTGTAGACATCAACCTCTACCTTCTTTAAACGGACTACAAAATTCTTCACCTGTGACGAAAAAAAAAAAAATCATTTTGCTGGCTGATCGCAATCATTCAAATTCCGAAGATGTCAGATATTTTAGAGAAGGGGGGGAAACAAACTCTTACCTTCATTGGGGAGGAGTGGGACAATCAACAGTTGGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGCCTGGAAGATTCTGCTTTTGCCATTGTGGAGGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGTGGAAAAACTGAGGGCAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGTTGACAGAGAAAA]

[+] EMBL FR0058575            [ATCTGTAGACATCAACCTCTACCTTCTTTAAACGGACTACAAAATTCTTCACCTGTGACGAAAAAAAAAAAAATCATTTTGCTGGCTGATCGCAATCATTCAAATTCCGAAGATGTCAGATATTTTAGAGAAGGGGGGGAAACAAACTCTTACCTTCATTGGGGAGGAGTGGGACAATCAACAGTTGGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGCCTGGAAGATTCTGCTTTTGCCATTGTGGAGGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATTAAAAGCTTTTGTGGAAAAACTGAGGGCAAATACAGGTAAAAAGAGGAAAAGAAACCCAGTCCAGTTGACAGAGAAAA]


>consensus_1686#1 ATCTGTAGACATCAACCTCTACCTTCTTTAAACGGACTACAAAATTCTTCACCTGTGACG AAAAAAAAAAAAATCATTTTGCTGGCTGATCGCAATCATTCAAATTCCGAAGATGTCAGA TATTTTAGAGAAGGGGGGGAAACAAACTCTTACCTTCATTGGGGAGGAGTGGGACAATCA ACAGTTGGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCCTAA CATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGCCTGGAAGATTCTGCTTT TGCCATTGTGGAGGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACCATT AAAAGCTTTTGTGGAAAAACTGAGGGCAAATACAGGTAAAAAGAGGAAAAGAAACCCAGT CCAGTTGACAGAGAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1686#0      ------------------------------------------------------------
consensus_1686#1      ATCTGTAGACATCAACCTCTACCTTCTTTAAACGGACTACAAAATTCTTCACCTGTGACG 60
                                                                                  

consensus_1686#0      ------------------------ATCAATAAAGAAGAAAACAAGCTGGAAAACGATGTC 36
consensus_1686#1      AAAAAAAAAAAAATCATTTTGCTGGCTGATCGC-AATCATTCAAATTCCGAA--GATGTC 117
                                                  **    **  *  ***  *   **  ******

consensus_1686#0      AGATATTTTAGAGAAGGAGTGGAAACAAACTCTTACCTTCATTGTGGAGGAGTTGGACAA 96
consensus_1686#1      AGATATTTTAGAGAAGGGGGGGAAACAAACTCTTACCTTCATTGGGGAGGAGTGGGACAA 177
                      ***************** * ************************ ******** ******

consensus_1686#0      TCAACAGTTTGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCC 156
consensus_1686#1      TCAACAGTTGGAAAAACTGCTGGAACTTTTGTCCAAGATTCCCAAAGGTCAGAAGACCCC 237
                      ********* **************************************************

consensus_1686#0      TAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGTCTTGAAGATTCTGT 216
consensus_1686#1      TAACATCCGGGGAAATATGGCGCAAATAATTAATGAGCACTATGGCCTGGAAGATTCTGC 297
                      ********************************************* ** ********** 

consensus_1686#0      TTTTGCCATTGTTGATGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACC 276
consensus_1686#1      TTTTGCCATTGTGGAGGCCATGGAAACGATACCGAGGCGGGACGACAAAATTCAGGAACC 357
                      ************ ** ********************************************

consensus_1686#0      ATTAAAAGCTTTTGGGGAAAAAACTGAAGGGAAATACAGGTAAAAAGAGGAAAAGAAACC 336
consensus_1686#1      ATTAAAAGCTTTTGTGGAAAAA-CTGAGGGCAAATACAGGTAAAAAGAGGAAAAGAAACC 416
                      ************** ******* **** ** *****************************

consensus_1686#0      CAGTCCAGGTGACAGAGAAAACTACCTTGGATAAAAAGAGGAAACTTGATCCAAATACAA 396
consensus_1686#1      CAGTCCAGTTGACAGAGAAAA--------------------------------------- 437
                      ******** ************                                       

consensus_1686#0      CAGAACAAACAGAAGCAGGAGGTTCACGTCCTGTGATGGCTAAAGGAATATTGGCTGGCC 456
consensus_1686#1      ------------------------------------------------------------
                                                                                  

consensus_1686#0      AACCTGCCACAGAGACAGACACTGCTTCTTGGAGCAAGTCCATCTGTGATTTGGTAGCGG 516
consensus_1686#1      ------------------------------------------------------------
                                                                                  

consensus_1686#0      CCCATGAGGTCGTTGCCACAGCCACCATCCGGGGAAGAATCATGGACAAATCTAAACTGC 576
consensus_1686#1      ------------------------------------------------------------
                                                                                  

consensus_1686#0      AGACATACAAAACCCAGAAAAAAGATTTCTTCTTTTTGTTAGTCACAGATGAGACAGCCA 636
consensus_1686#1      ------------------------------------------------------------
                                                                                  

consensus_1686#0      GCATTAAAATGATGGTGTATGGAAAACCACA 667
consensus_1686#1      -------------------------------
                                                     




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)