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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1135 fasta sequence
[GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGCGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGACCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGATCATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGCTGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAAAGCCATCGAGCTGCCGCCATGGCGAGGCGCAAACTACTGCCAGGTCGTATTCAGCTCTGGGGTCATGCCATCGCAGTGGACTGGGCGGAGCCTGAGGTGGAGGTCGACGAGGACACCATGGCAACTGTAAAGATCTTGTATGTGAGGAACTTGATGCTTCAGACCACAGAGGAGACCATCGAGAAGGAGTTTAATAGCCTAAAACAAGGTGCAGTGGAGCGAGTGAAGAAAATCAGAGATTACGCCTTTGTGCACTTCACCCAGCGAGAAGATGCCATCCATGCCATGAACGCGCTCAACGGAAAGGTGGTTGACGGCTCTCCCATTGAGGTGACTCTGGCGAAGCCAGTGGACAAGGACAGCTACGTCCGATACACTAGAGGAACCGGAGGACGGGGTGGATCTCTGCAGACCGACTACGCCACCTATTCAGTGGGACAGATGTACGACCCTTCGACGGCGTATCTCGGCGCGCCCATGTTTTACGCC]
[+] EMBL CA590172 [GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGCGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGACCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGATCATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGCTGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAA ]
[+] EMBL CA847002 [ CGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGCATACCAAGAAGCGCGAGGAGATCATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGCTGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAAAGCCATCGAGCTGCCGCCATGGCGAGGCGCAAACTACTGCCAGGTCGTATTCAGCTCTGGGGTCATGCCATCGCAGTGGACTGGGCGGAGCCTGAGGTGGAGGTCGACGAGGACACCATGGCAACTGTAAAGATCTTGTATGTGAGGAACTTGATGCTTCAGACCACAGAGGAGACCATCGAGAAGGAGTTTAATAGCCTAAAACAAGGTGCAGTGGAGCGAGTGAAGAAAATCAGAGATTACGCCTTTGTGCACTTCACCCAGCGAGAAGATGCCATCCATGCCATGAACGCGCTCAACGGAAAGGTGGTTGACGGCTCTCCCATTGAGGTGACTCTGGCGAAGCCAGTGGACAAGGACAGCTACGTCCGATACACTAGAGGAACCGGAGGACGGGGTGGATCTCTGCAGACCGACTACGCCACCTATTCAGTGGGACAGATGTACGACCCTTCGACGGCGTATCTCGGCGCGCCCATGTTTTACGCC]
consensusID : consensus_1689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence
[GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGTGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGATCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGGTGACGGAGGAAAGGAGGTCCCTTCGTTCCGCCTGTCTCTTTTTAACCGCTGCTCTCCCCGTCTTCAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGGTGACGCCAGAGATAGAAAGTTGAGGAAGAACCCAAGTTTTTGGTCTTCTTCACCAGTTAAACGATCGAATCTTTTGGATGGCGCCGAGGCAACGTGTCACAGAGCCTTCTCTCTCCGCGGCTGCGCTTCACCTCCACAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGA]
[+] EMBL CA591624 [GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGTGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGATCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGGTGACGGAGGAAAGGAGGTCCCTTCGTTCCGCCTGTCTCTTTTTAACCGCTGCTCTCCCCGTCTTCAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGGTGACGCCAGAGATAGAAAGTTGAGGAAGAACCCAAGTTTTTGGTCTTCTTCACCAGTTAAACGATCGAATCTTTTGGATGGCGCCGAGGCAACGTGTCACAGAGCCTTCTCTCTCCGCGGCTGCGCTTCACCTCCACAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1689#0 GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTAC 60
consensus_1689#1 GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTAC 60
************************************************************
consensus_1689#0 ATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGAC 120
consensus_1689#1 ATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGAC 120
************************************************************
consensus_1689#0 GGGGACCCAGAAGGAGGCGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCG 180
consensus_1689#1 GGGGACCCAGAAGGAGGTGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCG 180
***************** ******************************************
consensus_1689#0 GCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACC 240
consensus_1689#1 GCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACC 240
************************************************************
consensus_1689#0 AGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGACCTGTTTGAGGACGAACT 300
consensus_1689#1 AGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGATCTGTTTGAGGACGAACT 300
****************************************** *****************
consensus_1689#0 GGTGCCGCTATGTGAGAAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAG 360
consensus_1689#1 GGTGCCGCTATGTGAGAA----GGTGACG-----GAGGAAAGGAGGTCCCTTCGTTCCGC 351
****************** *** * **** **** * * * *
consensus_1689#0 CGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGC 420
consensus_1689#1 CTGTCTCTTTTTAACCGCTGCTCTCCCCGTCTTCAGTTCGGTA----AAATCTACGAGGT 407
* * * * ** ** * ****** * * * * * **
consensus_1689#0 GATGAAGCAGCTCAACAACTACGAGATCAGAAACGGACGTCTCCTTGGAGTTTGCGCCAG 480
consensus_1689#1 GAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATAC---------GCCTTCGTCAC 458
** ** * * * ** * ** ** ** *** * * ** **
consensus_1689#0 CGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGAT 540
consensus_1689#1 CTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAG 518
* * **** * * * * *** * * *** ** **** *
consensus_1689#0 CATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGC 600
consensus_1689#1 GTGACGCCAGAGATAGAAAGTTGAGGAAGAACCCAAGTTTTTGGTCTTCTTCACCAGT-- 576
** *** *** ** ** * * * * ** * * * * ***
consensus_1689#0 TGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAAAGCCATCGAGCTGC 660
consensus_1689#1 ---TAAACGATCGAATCTTTTGGATGGCGCCGAGGCAACGTGTCACAG--AGCCTTCTCT 631
* *** ** * **** * ** * ** * * **
consensus_1689#0 CGCCATGGCGAGGCGCAAACTACTGCCAGGTCGTATTCAGCTCTGGGGTCATGCCATCGC 720
consensus_1689#1 CTCCGCGGCTGCGCTTCACCTCCACAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGT 691
* ** *** ** * ** * * * ** ** * * * **** **
consensus_1689#0 AGTGGACTGGGCGGAGCCTGAGGTGGAGGTCGACGAGGACACCATGGCAACTGTAAAGAT 780
consensus_1689#1 GGACAACTGCCGCCTGTTTGTGGGCGGGATTCC---GAAAACCAAGAAGCGCGAGGAGA- 747
* **** * ** ** * * * * * **** * * ***
consensus_1689#0 CTTGTATGTGAGGAACTTGATGCTTCAGACCACAGAGGAGACCATCGAGAAGGAGTTTAA 840
consensus_1689#1 ------------------------------------------------------------
consensus_1689#0 TAGCCTAAAACAAGGTGCAGTGGAGCGAGTGAAGAAAATCAGAGATTACGCCTTTGTGCA 900
consensus_1689#1 ------------------------------------------------------------
consensus_1689#0 CTTCACCCAGCGAGAAGATGCCATCCATGCCATGAACGCGCTCAACGGAAAGGTGGTTGA 960
consensus_1689#1 ------------------------------------------------------------
consensus_1689#0 CGGCTCTCCCATTGAGGTGACTCTGGCGAAGCCAGTGGACAAGGACAGCTACGTCCGATA 1020
consensus_1689#1 ------------------------------------------------------------
consensus_1689#0 CACTAGAGGAACCGGAGGACGGGGTGGATCTCTGCAGACCGACTACGCCACCTATTCAGT 1080
consensus_1689#1 ------------------------------------------------------------
consensus_1689#0 GGGACAGATGTACGACCCTTCGACGGCGTATCTCGGCGCGCCCATGTTTTACGCC 1135
consensus_1689#1 -------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |