Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1692 cluster # 1692       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1692#0 length = 451 sequences # 2  
 consensus_1692#1 length = 240 sequences # 1  
consensusID : consensus_1692#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 451
fasta sequence 
                              [TATTGTTGCGGCGGCTCCATCATGGCGGCTCCGGGCTGCGTCTTCCACCGAACCCTGGCTCGGTCCAGACAGCCTCCTCACAAGGTGGTCTGCAGGGACCTGCTGCTGGTGGCGGCGCTGCAGCGCTACAGCAGGGACCAGGGCTCCTCCGTCTACTTCCCCCAGGCCGTCCTCAGAGGCCAGGACCTTTATGACGTCACGCTGACGGACGGGGACTGCAGGCTGAGGGTCACTCTGGATCCTGGTCTGAACCGACTGGTGGAGAGACGCGTCCTGCAGGCTGGGTCCTCGCTCCGGAATGCCACGTTTGGCCACGCCATGACCGCTCAGCTCCCGGAACACCCTGGAGCGTCTGCAGCCGGACCCAGTCTCATCCTGCTGAGTGCGGAGGTGACGGGAGGTCCGGAGGAGGAGGCCCGCAGGCTCCGCCCCCAGCCTCTGCCCTGGTTTG]

[+] EMBL CA590180             [TATTGTTGCGGCGGCTCCATCATGGCGGCTCCGGGCTGCGTCTTCCACCGAACCCTGGCTCGGTCCAGACAGCCTCCTCACAAGGTGGTCTGCAGGGACCTGCTGCTGGTGGCGGCGCTGCAGCGCTACAGCAGGGACCAGGGCTCCTCCGTCTACTTCCCCCAGGCCGTCCTCAGAGGCCAGGACCTTTATGACGTCACGCTGACGGACGGGGACTGCAGGCTGAGGGTCACTCTGGATCCTGGTCTGAACCGACTGGTGGAGAGACGCGTCCTGCAGGCTGGGTCCTCGCTCCGGAATGCCACGTTTGGCCACGCCATGACCGCTCAGCTCCCGGAACACCCTGGAGCGTCTGCAGCCGGACCCAGTCTCATCCTGCTGAGTGTGGAGGTGACGGGAGGTCCGGAGGAGGAGGCCCGCAGGCTCCGCCCCCAGCCTCTGCCCTGGTTTG]
[+] EMBL FR0060448            [                                                                       GCCTCCTCACAAGGTGGTCTGCACCCACCTGCTGCTGGTGGCGGCGCTGCAGCGCTACAGCAGGGACCAGGGCTCCTCCGTCTACTTCCCCCAGGCCGTCCTCAGAGGCCAGGACCTTTATGACGTCACGCTGACGGACGGGGACTGCAGGCTGAGGGTCACTCTGGATCCTGGTCTGAACCGACTGGTGGAGAGACGCGTCCTGCAGGCTGGGTCCTCGCTCCGGAATGCCACGTTTGGCCACGCCATGTCCGCTCAGCTCCCGGAACACCCTGGAGCGTCTGCAGCCGGACCCAGTCTCATCCTGCTGAGTGCGGAGGTGAC                                                        ]




>consensus_1692#0
TATTGTTGCGGCGGCTCCATCATGGCGGCTCCGGGCTGCGTCTTCCACCGAACCCTGGCT
CGGTCCAGACAGCCTCCTCACAAGGTGGTCTGCAGGGACCTGCTGCTGGTGGCGGCGCTG
CAGCGCTACAGCAGGGACCAGGGCTCCTCCGTCTACTTCCCCCAGGCCGTCCTCAGAGGC
CAGGACCTTTATGACGTCACGCTGACGGACGGGGACTGCAGGCTGAGGGTCACTCTGGAT
CCTGGTCTGAACCGACTGGTGGAGAGACGCGTCCTGCAGGCTGGGTCCTCGCTCCGGAAT
GCCACGTTTGGCCACGCCATGACCGCTCAGCTCCCGGAACACCCTGGAGCGTCTGCAGCC
GGACCCAGTCTCATCCTGCTGAGTGCGGAGGTGACGGGAGGTCCGGAGGAGGAGGCCCGC
AGGCTCCGCCCCCAGCCTCTGCCCTGGTTTG

consensusID : consensus_1692#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence 
                              [TTACTTCCCCCATGCCGTCCTCAGAGGAGAGACTGCTCCCCCACAGGTATTGGGTCTCCGAAGGCCCAAACTGTGTGTGTGTGAGGGCTCTGCTCCGTCCCAGGCCAGGACCTTTATGACGCCACGCTGACGGACGGGGACTGCAGGCTGAGGGCCACTCTGGATCCTGTTCTGAACCGACTGGTGGAGAGACCCGTCCTGCAGGCTGGTTCCTCGCTCCGGAATGCCACGTTTGGCCAC]

[+] EMBL FR0059765            [TTACTTCCCCCATGCCGTCCTCAGAGGAGAGACTGCTCCCCCACAGGTATTGGGTCTCCGAAGGCCCAAACTGTGTGTGTGTGAGGGCTCTGCTCCGTCCCAGGCCAGGACCTTTATGACGCCACGCTGACGGACGGGGACTGCAGGCTGAGGGCCACTCTGGATCCTGTTCTGAACCGACTGGTGGAGAGACCCGTCCTGCAGGCTGGTTCCTCGCTCCGGAATGCCACGTTTGGCCAC]




>consensus_1692#1
TTACTTCCCCCATGCCGTCCTCAGAGGAGAGACTGCTCCCCCACAGGTATTGGGTCTCCG
AAGGCCCAAACTGTGTGTGTGTGAGGGCTCTGCTCCGTCCCAGGCCAGGACCTTTATGAC
GCCACGCTGACGGACGGGGACTGCAGGCTGAGGGCCACTCTGGATCCTGTTCTGAACCGA
CTGGTGGAGAGACCCGTCCTGCAGGCTGGTTCCTCGCTCCGGAATGCCACGTTTGGCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1692#0      TATTGTTGCGGCGGCTCCATCATGGCGGCTCCGGGCTGCGTCTTCCACCGAACCCTGGCT 60
consensus_1692#1      -------------------------------------------------------TTACT 5
                                                                             *  **

consensus_1692#0      CGGTCCAGACAGCCTCCTCACAAGGTGGTCTGCAGGGACCTGCTGCTGGTGGCGGCGCTG 120
consensus_1692#1      TCCCCCATGC--CGTCCTCAGAGGAGAGACTGC-----TCCCCCACAGGTATTGGGTCTC 58
                          ***  *  * ****** * *   * ****      *  *  * ***   **  ** 

consensus_1692#0      CAGCGCTACAGCAGGGACCAGGGCTCCTCCGTCTACTTCCCCCAGGCCGTCCTCAGAGGC 180
consensus_1692#1      CG----------AAGGCCCAAACTGTGTGTGTGTGAGGGCTCTGCTCCGTCCC---AGGC 105
                      *           * ** ***       *  ** *     * *    ******    ****

consensus_1692#0      CAGGACCTTTATGACGTCACGCTGACGGACGGGGACTGCAGGCTGAGGGTCACTCTGGAT 240
consensus_1692#1      CAGGACCTTTATGACGCCACGCTGACGGACGGGGACTGCAGGCTGAGGGCCACTCTGGAT 165
                      **************** ******************************** **********

consensus_1692#0      CCTGGTCTGAACCGACTGGTGGAGAGACGCGTCCTGCAGGCTGGGTCCTCGCTCCGGAAT 300
consensus_1692#1      CCTGTTCTGAACCGACTGGTGGAGAGACCCGTCCTGCAGGCTGGTTCCTCGCTCCGGAAT 225
                      **** *********************** *************** ***************

consensus_1692#0      GCCACGTTTGGCCACGCCATGACCGCTCAGCTCCCGGAACACCCTGGAGCGTCTGCAGCC 360
consensus_1692#1      GCCACGTTTGGCCAC--------------------------------------------- 240
                      ***************                                             

consensus_1692#0      GGACCCAGTCTCATCCTGCTGAGTGCGGAGGTGACGGGAGGTCCGGAGGAGGAGGCCCGC 420
consensus_1692#1      ------------------------------------------------------------
                                                                                  

consensus_1692#0      AGGCTCCGCCCCCAGCCTCTGCCCTGGTTTG 451
consensus_1692#1      -------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)