These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 626 fasta sequence [ACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGG-AAGGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCGGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAGTCCCCAACCAAGATCCTTTTATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATGCCCCGTCTGATTGCCAAGGTTGAAGGCAAAGGGAATGGAATCAAGACGGTCATTGTCAACATGGTTGACGTTTGCAAGGCG] [+] EMBL CA590430 [ACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAAGGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCGGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAATCCCCAACCAAGATCCTTTTATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATGCCCCGTCTGATTGCCAAGGTTGAAGGCAAAGGGAATGGAATCAAGACGGTCATTGTCAACATGGTTGACGTTTGCAAGGCG] [+] EMBL CA845943 [ AACATTCGAG AGGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCACGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAGTCCCCAACCAAGATCCTTTTATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCA ] consensusID : consensus_1700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [TGACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAAGGTGCGGACAGAAATCAAGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCC] [+] EMBL CA332860 [TGACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAAGGTGCGGACAGAAATCAAGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1700#0 --ACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGAAG 58 consensus_1700#1 TGACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAA 60 ******************************************************* * consensus_1700#0 G------------------TCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTC 100 consensus_1700#1 GGTGCGGACAGAAATCAAGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTC 120 * ***************************************** consensus_1700#0 TGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGA 160 consensus_1700#1 TGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGA 180 ************************************************************ consensus_1700#0 AAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGA 220 consensus_1700#1 AAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGA 240 ************************************************************ consensus_1700#0 CCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAA 280 consensus_1700#1 CCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAA 300 ************************************************************ consensus_1700#0 ACGAGCTGTTGCGCGGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAG 340 consensus_1700#1 ACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAG 360 ************** ********************************************* consensus_1700#0 CTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTT 400 consensus_1700#1 CTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTT 420 ************************************************************ consensus_1700#0 TATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAGTCCCCAACCAAGATCCTTTT 460 consensus_1700#1 TATGTCATCCCCTCTTTTCCAGACAGAAGATCCC-------------------------- 454 ********************************** consensus_1700#0 ATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTC 520 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 AGACCAGTTCTATCGCTACAAGATGCCCCGTCTGATTGCCAAGGTTGAAGGCAAAGGGAA 580 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 TGGAATCAAGACGGTCATTGTCAACATGGTTGACGTTTGCAAGGCG 626 consensus_1700#1 ---------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |