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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 626 fasta sequence
[ACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGG-AAGGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCGGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAGTCCCCAACCAAGATCCTTTTATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATGCCCCGTCTGATTGCCAAGGTTGAAGGCAAAGGGAATGGAATCAAGACGGTCATTGTCAACATGGTTGACGTTTGCAAGGCG]
[+] EMBL CA590430 [ACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAAGGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCGGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAATCCCCAACCAAGATCCTTTTATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATGCCCCGTCTGATTGCCAAGGTTGAAGGCAAAGGGAATGGAATCAAGACGGTCATTGTCAACATGGTTGACGTTTGCAAGGCG]
[+] EMBL CA845943 [ AACATTCGAG AGGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCACGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAGTCCCCAACCAAGATCCTTTTATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCA ]
consensusID : consensus_1700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[TGACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAAGGTGCGGACAGAAATCAAGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCC]
[+] EMBL CA332860 [TGACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAAGGTGCGGACAGAAATCAAGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1700#0 --ACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGAAG 58
consensus_1700#1 TGACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAA 60
******************************************************* *
consensus_1700#0 G------------------TCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTC 100
consensus_1700#1 GGTGCGGACAGAAATCAAGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTC 120
* *****************************************
consensus_1700#0 TGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGA 160
consensus_1700#1 TGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGA 180
************************************************************
consensus_1700#0 AAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGA 220
consensus_1700#1 AAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGA 240
************************************************************
consensus_1700#0 CCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAA 280
consensus_1700#1 CCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAA 300
************************************************************
consensus_1700#0 ACGAGCTGTTGCGCGGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAG 340
consensus_1700#1 ACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAG 360
************** *********************************************
consensus_1700#0 CTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTT 400
consensus_1700#1 CTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTT 420
************************************************************
consensus_1700#0 TATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAGTCCCCAACCAAGATCCTTTT 460
consensus_1700#1 TATGTCATCCCCTCTTTTCCAGACAGAAGATCCC-------------------------- 454
**********************************
consensus_1700#0 ATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTC 520
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 AGACCAGTTCTATCGCTACAAGATGCCCCGTCTGATTGCCAAGGTTGAAGGCAAAGGGAA 580
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 TGGAATCAAGACGGTCATTGTCAACATGGTTGACGTTTGCAAGGCG 626
consensus_1700#1 ----------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |