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Takifugu rubripes
cluster # 1700 cluster # 1700       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1700#0 length = 626 sequences # 2  
consensus_1700#1 length = 454 sequences # 1  

consensusID : consensus_1700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 626
fasta sequence
                              [ACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGG-AAGGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCGGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAGTCCCCAACCAAGATCCTTTTATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATGCCCCGTCTGATTGCCAAGGTTGAAGGCAAAGGGAATGGAATCAAGACGGTCATTGTCAACATGGTTGACGTTTGCAAGGCG]

[+] EMBL CA590430             [ACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAAGGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCGGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAATCCCCAACCAAGATCCTTTTATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATGCCCCGTCTGATTGCCAAGGTTGAAGGCAAAGGGAATGGAATCAAGACGGTCATTGTCAACATGGTTGACGTTTGCAAGGCG]
[+] EMBL CA845943             [                                          AACATTCGAG     AGGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCACGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAGTCCCCAACCAAGATCCTTTTATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCA                                                                                                                 ]


>consensus_1700#0 ACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGAAGGT CCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCAC TGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGA ACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCT TGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCGGCCGT TGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACA GCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCC AGACAGAAGATCCCGAAAAGTCCCCAACCAAGATCCTTTTATCTTACTGATAGTGCTAAC ATCCATCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACA AGATGCCCCGTCTGATTGCCAAGGTTGAAGGCAAAGGGAATGGAATCAAGACGGTCATTG TCAACATGGTTGACGTTTGCAAGGCG



consensusID : consensus_1700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence
                              [TGACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAAGGTGCGGACAGAAATCAAGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCC]

[+] EMBL CA332860             [TGACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAAGGTGCGGACAGAAATCAAGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTCTGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGAAAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGACCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAAACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAGCTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTTTATGTCATCCCCTCTTTTCCAGACAGAAGATCCC]


>consensus_1700#1 TGACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAA GGTGCGGACAGAAATCAAGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTC TGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGA AAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGA CCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAA ACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAG CTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTT TATGTCATCCCCTCTTTTCCAGACAGAAGATCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1700#0      --ACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGAAG 58
consensus_1700#1      TGACGATAGTAGGTTAAAGCGACGCATTTAGCAGCTTTTCCCAGAACATTCGAGAGGTAA 60
                        ******************************************************* * 

consensus_1700#0      G------------------TCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTC 100
consensus_1700#1      GGTGCGGACAGAAATCAAGTCCCCAAACCCCGAGGACGTTCTGGATAGCAGCCTTCTGTC 120
                      *                  *****************************************

consensus_1700#0      TGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGA 160
consensus_1700#1      TGTGAGCCTGGCACCTGCACTGTTTGGACGCATTAGGGGGTTGACCGGTGCATCTTTTGA 180
                      ************************************************************

consensus_1700#0      AAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGA 220
consensus_1700#1      AAGGCAAAGAACCATTAAGAACCCTGCTGCAATCGATACAACTTCAGCACCAGCCATCGA 240
                      ************************************************************

consensus_1700#0      CCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAA 280
consensus_1700#1      CCACCGTTCACTGCGGCTCTTGGACGATCAGCGTTGTGTTTATGTCTTTGTTTTGCGAAA 300
                      ************************************************************

consensus_1700#0      ACGAGCTGTTGCGCGGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAG 340
consensus_1700#1      ACGAGCTGTTGCGCAGCCGTTGGAACCTGTGTGGTGGAAATCTAGCCTTCAAGCAAGGAG 360
                      ************** *********************************************

consensus_1700#0      CTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTT 400
consensus_1700#1      CTTGCGGCCACAGCGGCACAGCGTTTTTCATGTCAGAGACCGAGCGCGCTTGCAGTCGTT 420
                      ************************************************************

consensus_1700#0      TATGTCATCCCCTCTTTTCCAGACAGAAGATCCCGAAAAGTCCCCAACCAAGATCCTTTT 460
consensus_1700#1      TATGTCATCCCCTCTTTTCCAGACAGAAGATCCC-------------------------- 454
                      **********************************                          

consensus_1700#0      ATCTTACTGATAGTGCTAACATCCATCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTC 520
consensus_1700#1      ------------------------------------------------------------
                                                                                  

consensus_1700#0      AGACCAGTTCTATCGCTACAAGATGCCCCGTCTGATTGCCAAGGTTGAAGGCAAAGGGAA 580
consensus_1700#1      ------------------------------------------------------------
                                                                                  

consensus_1700#0      TGGAATCAAGACGGTCATTGTCAACATGGTTGACGTTTGCAAGGCG 626
consensus_1700#1      ----------------------------------------------
                                                                    




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)