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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence
[ATTCAAAAACAACTTTATTCATGAGAATAAAACAGGTGTGAGACGAGGAAGCGTCCTGATCCAGGGTCACTCCAGGGTCACTCCAGGACTTTCCAGGTTGCTTTTAAAACTGAGAATCATTAAAAAAGTTCTGATGGAGTCAATGTCAAGACGTTGATTCAGAGTCAACATCAAACCGCTGATAAAGCCTGACCGTGATGTCATCACCCTCAACCCATCAGCTGCCACTTCTGCTGCGGCGAAGCGTCGCATATCGCCATGGCAACGTAACCCTTGGGCCCAACGGGCTGCGTGACCGAGAGACACTGACCCACGGACACCTGATAGAGGCGGTCCGACTTCCCCATGCTCCACTGCTGTGACCCCCCCGACCCGTGACACTTCATCAGTCTGGGAGGGTCAAAGGTCCGAACCTCCGATACATCCAGACACAACAGGCCCGCCAGAACCAGCTGACCCTCCTCATCGTAGGCCCACTCCTGTTCAGGATCTTGGGGGTCACAAGGTCGTAGGACCACAGCTCCGCCCTTCTGGCTGGCTCGACCTTGGGCGACCAGACAACGGTTGGTGGCTCTGTTGTGAAGCCGTCCTCTCTGCAG]
[+] EMBL CA331569 [ATTCAAAAACAACTTTATTCATGAGAATAAAACAGGTGTGAGACGAGGAAGCGTCCTGATCCAGGGTCACTCCAGGGTCACTCCAGGACTTTCCAGGTTGCTTTTAAAACTGAGAATCATTAAAAAAGTTCTGATGGAGTCAATGTCAAGACGTTGATTCAGAGTCAACATCAAACCGCTGATAAAGCCTGACCGTGATGTCATCACCCTCAACCCATCAGCTGCCACTTCTGCTGCGGCGAAGCGTCGCATATCGCCATGGCAACGTAACCCTTGGGCCCAACGGGCTGCGTGACCGAGAGACACTGACCCACGGACACCTGATAGAGGCGGTCCGACTTCCCCATGCTCCACTGCTGTGACCCCCCCGACCCGTGACACTTCATCAGTCTGGGAGGGTCAAAGGTCCGAACCTCCGATACATCCAGACACAACAGGCCCGCCAGAACCAGCTGACCCTCCTCATCGTAGGCCCACTCCTGTTCAGGATCTTGGGGGTCACAAGGTCGTAGGACCACAGCTCCGCCCTTCTGGCTGGCTCGACCTTGGGCGACCAGACAACGGTTGGTGGCTCTGTTGTGAAGCCGTCCTCTCTGCAG]
[+] EMBL CA331801 [ TTCAAAAACAACTTTATTCATGAGAATAAAACAGGTGTGAGACGAGGAAGCGTCCTGATCCAGGGTCACTCCAGGGTCACTCCAGGACTTTCCAGGTTGCTTTTAAAACTGAGAATCATTAAAAAAGTTCTGATGGAGTCAATGTCAAGACGTTGATTCAGAGTCAACATCAAACCGCTGATAAAGCCTGACCGTGATGTCATCACCCTCAACCCATCAGCTGCCACTTCTGCTGCGGCGAAGCGTCGCATATCGCCATGGCAACGTAACCCTTGGGCCCAACGGGCTGCGTGACCGAGAGACACTGACCCACGGACACCTGATAGAGGCGGTCCGACTTCCCCATGCTCCACTGCTGTGACCCCCCCGACCCGTGACACTTCATCAGTCTGGGAGGGTCAAAGGTCCGAACCTCCGATACATCCAGACACAACAGGCCCGCCAGAACCAGCTGACCCTCCTCATCGTAGGCCCACTCCTGTTCAGGATCTTGGGGGTCACAAGGTCGTAGGACCACAGCTCCGCCCTTCTGGCTGGCTCGACCTTGGGCGACCAGACAACGGTTGGTGGCTCTGTTGTGAAGCCGTCCTCTCTGCAG]
consensusID : consensus_1706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[TTCATTCAAAAACAACTTTATTCATGAGAATAAAACAGGTGTGAGACGAGGAAGCGTCCTGATCCAGGGTCACTCCAGGGTCACTCCAGGACTTTCCAGGTTGCTTTTAAAACTGAGAATCATTAAAAAAGTTCTGATGGAGTCAATGTCAAGACGTTGATTCAGAGTCAACATCAAAGGGAAGAAAACCGCTGATAAAGCCTGACCGTGATGTCATCACCCTCAACCCATCAGCTGCCACTTCTGCTGCGGCGAAGCGTCGCATATCGCCATGGCAACATAACCCTTGGGCCCAACGGGCTGCGTGACCGAGAGACACTGACCCACGGACACCTGATAGAGGCGGTCCGACTTCCCCATGCTCCACTGCTGTGACCCCCCCGACCCGTGACACTTCATCAGTCT]
[+] EMBL CA329395 [TTCATTCAAAAACAACTTTATTCATGAGAATAAAACAGGTGTGAGACGAGGAAGCGTCCTGATCCAGGGTCACTCCAGGGTCACTCCAGGACTTTCCAGGTTGCTTTTAAAACTGAGAATCATTAAAAAAGTTCTGATGGAGTCAATGTCAAGACGTTGATTCAGAGTCAACATCAAAGGGAAGAAAACCGCTGATAAAGCCTGACCGTGATGTCATCACCCTCAACCCATCAGCTGCCACTTCTGCTGCGGCGAAGCGTCGCATATCGCCATGGCAACATAACCCTTGGGCCCAACGGGCTGCGTGACCGAGAGACACTGACCCACGGACACCTGATAGAGGCGGTCCGACTTCCCCATGCTCCACTGCTGTGACCCCCCCGACCCGTGACACTTCATCAGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1706#0 ---ATTCAAAAACAACTTTATTCATGAGAATAAAACAGGTGTGAGACGAGGAAGCGTCCT 57
consensus_1706#1 TTCATTCAAAAACAACTTTATTCATGAGAATAAAACAGGTGTGAGACGAGGAAGCGTCCT 60
*********************************************************
consensus_1706#0 GATCCAGGGTCACTCCAGGGTCACTCCAGGACTTTCCAGGTTGCTTTTAAAACTGAGAAT 117
consensus_1706#1 GATCCAGGGTCACTCCAGGGTCACTCCAGGACTTTCCAGGTTGCTTTTAAAACTGAGAAT 120
************************************************************
consensus_1706#0 CATTAAAAAAGTTCTGATGGAGTCAATGTCAAGACGTTGATTCAGAGTCAACATCAAA-- 175
consensus_1706#1 CATTAAAAAAGTTCTGATGGAGTCAATGTCAAGACGTTGATTCAGAGTCAACATCAAAGG 180
**********************************************************
consensus_1706#0 --------CCGCTGATAAAGCCTGACCGTGATGTCATCACCCTCAACCCATCAGCTGCCA 227
consensus_1706#1 GAAGAAAACCGCTGATAAAGCCTGACCGTGATGTCATCACCCTCAACCCATCAGCTGCCA 240
****************************************************
consensus_1706#0 CTTCTGCTGCGGCGAAGCGTCGCATATCGCCATGGCAACGTAACCCTTGGGCCCAACGGG 287
consensus_1706#1 CTTCTGCTGCGGCGAAGCGTCGCATATCGCCATGGCAACATAACCCTTGGGCCCAACGGG 300
*************************************** ********************
consensus_1706#0 CTGCGTGACCGAGAGACACTGACCCACGGACACCTGATAGAGGCGGTCCGACTTCCCCAT 347
consensus_1706#1 CTGCGTGACCGAGAGACACTGACCCACGGACACCTGATAGAGGCGGTCCGACTTCCCCAT 360
************************************************************
consensus_1706#0 GCTCCACTGCTGTGACCCCCCCGACCCGTGACACTTCATCAGTCTGGGAGGGTCAAAGGT 407
consensus_1706#1 GCTCCACTGCTGTGACCCCCCCGACCCGTGACACTTCATCAGTCT--------------- 405
*********************************************
consensus_1706#0 CCGAACCTCCGATACATCCAGACACAACAGGCCCGCCAGAACCAGCTGACCCTCCTCATC 467
consensus_1706#1 ------------------------------------------------------------
consensus_1706#0 GTAGGCCCACTCCTGTTCAGGATCTTGGGGGTCACAAGGTCGTAGGACCACAGCTCCGCC 527
consensus_1706#1 ------------------------------------------------------------
consensus_1706#0 CTTCTGGCTGGCTCGACCTTGGGCGACCAGACAACGGTTGGTGGCTCTGTTGTGAAGCCG 587
consensus_1706#1 ------------------------------------------------------------
consensus_1706#0 TCCTCTCTGCAG 599
consensus_1706#1 ------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |