These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [TGGTTCCACTGCACAGCCAAACCCGAAAAGCTCCATCTCATCTGACATTTGCAGAGCGACCATGATCTGCTGGTCCTCATCACAGATGTAGAGATGACATCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATAGATTTCAGCGCTCTCTCCAAAGATAACTCTTATCAGAACAACCAGTTGGCATTCGAGACTGCAGAGAAGCTGGGCATCCCTGCGCTACTCCACCCCAAAGAGCTGGCTTGCTCAGAGGTGCCGGACTCTTTGGGAGTCATCACTTACCTTTTCTGGTACTTCTGCTTCTTCCATGAGACATCTTCCGCTGGTCTTGCCAGTTTGGGAACATCACATGTCACCGATGCTAAGCAGCTTCCAAGAACTAAAACG] [+] EMBL CA591258 [TGGTTCCACTGCACAGCCAAACCCGAAAAGCTCCATCTCATCTGACATTTGCAGAGCGACCATGATCTGCTGGTCCTCATCACAGATGTAGAGATGACATCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATAGATTTCAGCGCTCTCTCCAAAGATAACTCTTATCAGAACAACCAGTTGGCATTCGAGACTGCAGAGAAGCTGGGCATCCCTGCGCTACTCCACCCCAAAGAGCTGGCTTGCTCAGAGGTGCCGGACTCTTTGGGAGTCATCACTTACCTTTTCTGGTACTTCTGCTTCTTCCATGAGACATCTTCCGCTGGTCTTGCCAGTTTGGGAACATCACATGTCACCGATGCTAAGCAGCTTCCAAGAACTAAAACG] consensusID : consensus_1710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 343 fasta sequence [CCATCTCAACTGACTTTTGCAGAGCGACCATGATCTGGTGGGCCTCATCACAGATGTAGAGATGACCTCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATGTGAGTAAAGATTCGGTTTAAGATTCGGCTCTGGAAAAGTTTCTGTCAGAGATTTCAGCGCTCTCTTCAAAGATAACTCTTATCAGAACAACCAGTTGGAATTCGAGACTGCAGAGAAGCTGGGCATTCCCTGCGCTAC] [+] EMBL FR0058324 [CCATCTCAACTGACTTTTGCAGAGCGACCATGATCTGGTGGGCCTCATCACAGATGTAGAGATGACCTCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATGTGAGTAAAGATTCGGTTTAAGATTCTGCTTTGGAAAAGTTTCTGTCAGAGATTTCAGCGCTCTCTTCAAAGATAACTCTTATCAGAACAACCAGTTGGAATTCGAGACTGCAGAGAAGCTGGGCATTCCCTGCGCTAC] [+] EMBL FR0058323 [ CAACTGATTTTTGCAGAGCGACCATGATCTGCTGGGCCTCATCACAGATGTAGAGATGACCTCTCTGACGGCTTTACGAGACTGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCATTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATGTGAGTAAAGATTCGGTTTAAGATTCGGCTCTGGAAAAGTTTCTGTCAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1710#0 TGGTTCCACTGCACAGCCAAACCCGAAAAGCTCCATCTCATCTGACATTTGCAGAGCGAC 60 consensus_1710#1 --------------------------------CCATCTCAACTGACTTTTGCAGAGCGAC 28 ******** ***** ************* consensus_1710#0 CATGATCTGCTGGTCCTCATCACAGATGTAGAGATGACATCTCTGACGGCTTTACGAGAC 120 consensus_1710#1 CATGATCTGGTGGGCCTCATCACAGATGTAGAGATGACCTCTCTGACGGCTTTACGAGAC 88 ********* *** ************************ ********************* consensus_1710#0 TGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCA 180 consensus_1710#1 TGGTGCCGGGATGCATGTGCAGGTTACCCCGATGTGGAAATAAAAAACATGTCAGCGTCA 148 ************************************************************ consensus_1710#0 TTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGAT---- 236 consensus_1710#1 TTCAGAGACGGACTTGCCTTTTGTGCCATCATCCACAAGCACCGACCTGACCTGATGTGA 208 ******************************************************** consensus_1710#0 ---------------------------------------------AGATTTCAGCGCTCT 251 consensus_1710#1 GTAAAGATTCGGTTTAAGATTCGGCTCTGGAAAAGTTTCTGTCAGAGATTTCAGCGCTCT 268 *************** consensus_1710#0 CTCCAAAGATAACTCTTATCAGAACAACCAGTTGGCATTCGAGACTGCAGAGAAGCTGGG 311 consensus_1710#1 CTTCAAAGATAACTCTTATCAGAACAACCAGTTGGAATTCGAGACTGCAGAGAAGCTGGG 328 ** ******************************** ************************ consensus_1710#0 CAT-CCCTGCGCTACTCCACCCCAAAGAGCTGGCTTGCTCAGAGGTGCCGGACTCTTTGG 370 consensus_1710#1 CATTCCCTGCGCTAC--------------------------------------------- 343 *** *********** consensus_1710#0 GAGTCATCACTTACCTTTTCTGGTACTTCTGCTTCTTCCATGAGACATCTTCCGCTGGTC 430 consensus_1710#1 ------------------------------------------------------------ consensus_1710#0 TTGCCAGTTTGGGAACATCACATGTCACCGATGCTAAGCAGCTTCCAAGAACTAAAACG 489 consensus_1710#1 ----------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |