|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 597 fasta sequence
[TGGGTCCAGTGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAGGAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAGAAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAAGCTGGGGGACATGAGGAGCTCTGCAGCCTTCAAGACCTTCGAAGATAAGATGGAGAACCTGAAGCATAAGGGGGTCGGTCCCCGGGGAGAACGGCGA]
[+] EMBL CA588890 [TGGGTCCAGTGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAGGAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAGAAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAA CTGGGGGACATGAGGAGCTCTGCAGCCTTCCAGACCTTTGAAGATAAGATGGAGAACCTGAAGCATAAAGGGGTCGGTCCCCGGGGAGAACGGCGA]
[+] EMBL BU806929 [ TGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGATGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAGGAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAGAAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAAGCTGGGGGACATGAGGAGCTCTGCAGCCTTCAAGACCTTCGAAGATAAGATGGAGAACCTGAAGCATAAGGTGGTCGGT ]
consensusID : consensus_1735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[ACATTTTAGCAGTCTGTAGGCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGATATTAACTTGAACTCTCCTAACAAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGTGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACC]
[+] EMBL FR0061440 [ACATTTTAGCAGTCTGTAGGCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGATATTAACTTGAACTCTCCTAACAAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGTGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1735#0 TGGGTCCAGTGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCAT 60
consensus_1735#1 ------------------------------------ACATTTTAGCAGTCTGTAGGCCAT 24
****************** ****
consensus_1735#0 CAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGAT 120
consensus_1735#1 CAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGAT 84
************************************************************
consensus_1735#0 CCTGCCAGTCAAG---------------------------GCTTCATGGTGGATCATTCT 153
consensus_1735#1 CCTGCCAGTCAAGATATTAACTTGAACTCTCCTAACAAAGGCTTCATGGTGGATCATTCT 144
************* ********************
consensus_1735#0 GAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCA 213
consensus_1735#1 GAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGTGGGGAACGCTGCCGACCCCCTCGCA 204
********************************** *************************
consensus_1735#0 CCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAG 273
consensus_1735#1 CCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAG 264
************************************************************
consensus_1735#0 GAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAG 333
consensus_1735#1 GAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAG 324
************************************************************
consensus_1735#0 AGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAG 393
consensus_1735#1 AGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACC----------------- 367
*******************************************
consensus_1735#0 GAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAG 453
consensus_1735#1 ------------------------------------------------------------
consensus_1735#0 AAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAAGCTGGGGGACATG 513
consensus_1735#1 ------------------------------------------------------------
consensus_1735#0 AGGAGCTCTGCAGCCTTCAAGACCTTCGAAGATAAGATGGAGAACCTGAAGCATAAGGGG 573
consensus_1735#1 ------------------------------------------------------------
consensus_1735#0 GTCGGTCCCCGGGGAGAACGGCGA 597
consensus_1735#1 ------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |