These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 780 fasta sequence [AAGCAGAGCGGAACAGGATGCAGGCTATCATTTGTGCGGTCGTGGGAGATGGAGCCGTGGNGAAAAACATGCTTACTCATCAGCTACACAACCAATGCCTTCCCTGGGGAGTACATCCCCACTGTATTTGACAACTACTCAGCTAATGTGATGGTAGACAGCAAACCAGTTAACCTGGGCCTCTGGGATACAGCTGGGCAGGAAGACTATGACAGGCTCCGCCCACTCTCCTACC-CACAGACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGAGCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGCACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTGGCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGATGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGATGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTTGCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCTCAGTATTATTGTTGTAATAACTGCAGCCAACAATGTTTTGACTTTAAAATGAGATGTGCATACTTTTTTAAAAATAAAAATGCTTCAATTTACACATCGCTACATTCCATATTCAACACATATTATTGATATTTC] [+] EMBL CA330647 [AAGCAGAGCGGAACAGGATGCAGGCTATCATTTGTGCGGTCGTGGGAGATGGAGCCGTGGNGAAAAACATGCTTACTCATCAGCTACACAACCAATGCCTTCCCTGGGGAGTACATCCCCACTGTATTTGACAACTACTCAGCTAATGTGATGGTAGACAGCAAACCAGTTAACCTGGGCCTCTGGGATACAGCTGGGCAGGAAGACTATGACAGGCTCCGCCCACTCTCCTACCTTTTAGACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGAGCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGCACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTGGCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGATGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGATGAAGCCAT ] [-] EMBL CA588747 [ GTGGGAGATGGACCCGTGG GAAAAACATGCTTACTCATCAGCTACACAACCAATCCCTTCCCTGGGGAGTACATCCCCACTGTATTTGACAACTACTCAGCTAATGTGATGGTAGACAGCAAACCAGTTAACCTGGGCCTCTGGGATACAGCTGGGCAGGAAGACTATGACAGGCTCCGCCCACTCTCCTACC CACAGACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGAGCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGCACAAAGCTGGATTTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTGGCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGATGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGATGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTTGCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCTCAGTATTATTGTTGTAATAACTGCAGCCAACAATGTTTTGACTTTAAAATGAGATGTGCATACTTTTTTAAAAATAAAAATGCTTCAATTTACACATCGCTACATTCCATATTCAACACATATTATTGATATTTC] consensusID : consensus_1759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [CGCCCCCTCTCCTACCCACAGACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGAGCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGCACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTGGCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGGTAAGACTCAAAGATGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGATGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTTGCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCT] [+] EMBL CA845600 [CGCCCCCTCTCCTACCCACAGACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGAGCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGCACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTGGCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGGTAAGACTCAAAGATGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGATGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTTGCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1759#0 AAGCAGAGCGGAACAGGATGCAGGCTATCATTTGTGCGGTCGTGGGAGATGGAGCCGTGG 60 consensus_1759#1 ------------------------------------------------------------ consensus_1759#0 NGAAAAACATGCTTACTCATCAGCTACACAACCAATGCCTTCCCTGGGGAGTACATCCCC 120 consensus_1759#1 ------------------------------------------------------------ consensus_1759#0 ACTGTATTTGACAACTACTCAGCTAATGTGATGGTAGACAGCAAACCAGTTAACCTGGGC 180 consensus_1759#1 ------------------------------------------------------------ consensus_1759#0 CTCTGGGATACAGCTGGGCAGGAAGACTATGACAGGCTCCGCCCACTCTCCTACCCACAG 240 consensus_1759#1 ---------------------------------------CGCCCCCTCTCCTACCCACAG 21 ***** *************** consensus_1759#0 ACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGA 300 consensus_1759#1 ACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGA 81 ************************************************************ consensus_1759#0 GCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGC 360 consensus_1759#1 GCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGC 141 ************************************************************ consensus_1759#0 ACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTG 420 consensus_1759#1 ACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTG 201 ************************************************************ consensus_1759#0 GCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAG-------------A 467 consensus_1759#1 GCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGGTAAGACTCAAAGA 261 ********************************************** * consensus_1759#0 TGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGA 527 consensus_1759#1 TGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGA 321 ************************************************************ consensus_1759#0 TGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTT 587 consensus_1759#1 TGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTT 381 ************************************************************ consensus_1759#0 GCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCTCA 647 consensus_1759#1 GCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCT-- 439 ********************************************************** consensus_1759#0 GTATTATTGTTGTAATAACTGCAGCCAACAATGTTTTGACTTTAAAATGAGATGTGCATA 707 consensus_1759#1 ------------------------------------------------------------ consensus_1759#0 CTTTTTTAAAAATAAAAATGCTTCAATTTACACATCGCTACATTCCATATTCAACACATA 767 consensus_1759#1 ------------------------------------------------------------ consensus_1759#0 TTATTGATATTTC 780 consensus_1759#1 ------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |