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Takifugu rubripes
cluster # 1771 cluster # 1771       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1771#0 length = 325 sequences # 2  
 consensus_1771#1 length = 309 sequences # 1  
consensusID : consensus_1771#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 325
fasta sequence 
                              [AGAGGCTCACTCAGGGCGCATCTGAAGATAATATTCCAACAATGGCTGAACCCATGTGTCGCAGCCGAGGAGGTGGTTGAAGGAAGACCAGTCAATGATCCTGTCCTGCAGCTGGTAGACACTCTTCAGATCACCAAGGGATCTGGTCCAACCAGGTACCGTGTCAGAATGAGTGATGGACGGCATTTGGGGTCAGCGGTCCTGCTCGCCACACAATTAAACCATCTTTCGGAAGAGAACCTGTTGGGTCCACACTGTGGGGGTTTGCTCAAGAAGACCACAACCAGCACATTATCAGATGGCAGACGTGGAGGTAACATCTTGG]

[+] EMBL FR0060988            [AGAGGCTCACTCAGGGCGCATCTGAAGATAATATTCCAACAATGGCTGAACCCATGTGTTATTGCCTAGGATCTGGTTGAAGGAAGACCAGTCAATGATCCTGTCCTGCAGCTGGTAGACACTCTTCAGATCACCAAGGGATCTGGTCCAACCAGGTACCGTGTCAGAATGAGTGATGGACGGCATTTGTGGTCAGCGGTCCTGCTCGCCACACAATTAAACCATCTTTCGGAAGAGAACCTGTTGGGTCCACACTGTGGGGGTTTGCTCAAGAAGACCACAACCAGCACATTATCAGATGGCAGACGTGTATGTTAtc      ]
[+] EMBL FR0058922            [                                                           CGCAGTTGAAGAGGTGGTTGAAGGAAGACCAGTCAATGATCCTGTCCTGCAGCTGGTAGACACTCTTCAGATCACCAAGGGATCTGGTCCAACCAGGTACCGTGTCAGAATGAGTGATGGACGGCATTTGGGGTCAGCGTTCCTGCTCGCCACACAATTAAACCATCTTTCGGAAGAGAACCTGTT GGTCCACACTGTGGGTGTTTGCTCAAGAAGACCACAACCAGCACATTATCAGATGGCAGACGTGGAGGTATCATCTTGG]




>consensus_1771#0
AGAGGCTCACTCAGGGCGCATCTGAAGATAATATTCCAACAATGGCTGAACCCATGTGTC
GCAGCCGAGGAGGTGGTTGAAGGAAGACCAGTCAATGATCCTGTCCTGCAGCTGGTAGAC
ACTCTTCAGATCACCAAGGGATCTGGTCCAACCAGGTACCGTGTCAGAATGAGTGATGGA
CGGCATTTGGGGTCAGCGGTCCTGCTCGCCACACAATTAAACCATCTTTCGGAAGAGAAC
CTGTTGGGTCCACACTGTGGGGGTTTGCTCAAGAAGACCACAACCAGCACATTATCAGAT
GGCAGACGTGGAGGTAACATCTTGG

consensusID : consensus_1771#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence 
                              [GTAAACATGGATATAAATTTCACTCAGGGCGCAGTTGAAGATGGTGTTGAAGGAAGACCAGTCAATGACCCTGTCCTGCAGCTGGTAGACACTCTTCAGATCACCAAGGGATCTGGTCCAACCAGGTACCGTGTCAGAATGAGTGATGGACGGCATTTGTGGTCAGCGTTCCTGCTCGCCACACAATTAAACCATCTTTCGGAAGAGAACCTGTTGGGTCCACACTGTGTGTGTTTGCTCAAGAAGACCACAACCAGCACATTATCAGATGGCAGACGTGTAGGTATCATCTTGGACATGGAAATATTA]

[+] EMBL FR0058901            [GTAAACATGGATATAAATTTCACTCAGGGCGCAGTTGAAGATGGTGTTGAAGGAAGACCAGTCAATGACCCTGTCCTGCAGCTGGTAGACACTCTTCAGATCACCAAGGGATCTGGTCCAACCAGGTACCGTGTCAGAATGAGTGATGGACGGCATTTGTGGTCAGCGTTCCTGCTCGCCACACAATTAAACCATCTTTCGGAAGAGAACCTGTTGGGTCCACACTGTGTGTGTTTGCTCAAGAAGACCACAACCAGCACATTATCAGATGGCAGACGTGTAGGTATCATCTTGGACATGGAAATATTA]




>consensus_1771#1
GTAAACATGGATATAAATTTCACTCAGGGCGCAGTTGAAGATGGTGTTGAAGGAAGACCA
GTCAATGACCCTGTCCTGCAGCTGGTAGACACTCTTCAGATCACCAAGGGATCTGGTCCA
ACCAGGTACCGTGTCAGAATGAGTGATGGACGGCATTTGTGGTCAGCGTTCCTGCTCGCC
ACACAATTAAACCATCTTTCGGAAGAGAACCTGTTGGGTCCACACTGTGTGTGTTTGCTC
AAGAAGACCACAACCAGCACATTATCAGATGGCAGACGTGTAGGTATCATCTTGGACATG
GAAATATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1771#0      AGAGGCTCACTCAGGGCGCATCTGAAGATAATATTCCAACAATGGCTGAACCCATGTGTC 60
consensus_1771#1      ---------------------------GTAA-ACATGGATATAAATTTCACTCAGGG--C 30
                                                  *** *     * *     *  ** ** *   *

consensus_1771#0      GCAGCCGAGGAGGTGGTTGAAGGAAGACCAGTCAATGATCCTGTCCTGCAGCTGGTAGAC 120
consensus_1771#1      GCAGTTGAAGATGGTGTTGAAGGAAGACCAGTCAATGACCCTGTCCTGCAGCTGGTAGAC 90
                      ****  ** ** *  *********************** *********************

consensus_1771#0      ACTCTTCAGATCACCAAGGGATCTGGTCCAACCAGGTACCGTGTCAGAATGAGTGATGGA 180
consensus_1771#1      ACTCTTCAGATCACCAAGGGATCTGGTCCAACCAGGTACCGTGTCAGAATGAGTGATGGA 150
                      ************************************************************

consensus_1771#0      CGGCATTTGGGGTCAGCGGTCCTGCTCGCCACACAATTAAACCATCTTTCGGAAGAGAAC 240
consensus_1771#1      CGGCATTTGTGGTCAGCGTTCCTGCTCGCCACACAATTAAACCATCTTTCGGAAGAGAAC 210
                      ********* ******** *****************************************

consensus_1771#0      CTGTTGGGTCCACACTGTGGGGGTTTGCTCAAGAAGACCACAACCAGCACATTATCAGAT 300
consensus_1771#1      CTGTTGGGTCCACACTGTGTGTGTTTGCTCAAGAAGACCACAACCAGCACATTATCAGAT 270
                      ******************* * **************************************

consensus_1771#0      GGCAGACGTGGAGGTAACATCTTGG-------------- 325
consensus_1771#1      GGCAGACGTGTAGGTATCATCTTGGACATGGAAATATTA 309
                      ********** ***** ********


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)