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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 621 fasta sequence
[GCCACCCGAGAAGTTCGACTCGCAACCATCTGTCAACCCTTTTCTACCTTTAAAAGGACCAGCCATGGGTAAAGGTTGCATCACAGTCACCAAATACTTCCTGTTCCTCTTCAACCTCCTCTTCTTTGTTTTTGGAGGTCTGATCATGGGCTTCGGCCTGTGGGTCCTGCTTGACAACCAGAGCTTCATCGCCGTCCTCCAGGAGTCATCAGACACAGTGAAAGTGGCTGCCTACATCCTCATTGGAGTGGGCTCCTTGTCCATGGCTCTGGGCTTCTTTGGCTGCATAGGAGCCATCTATGAAATCCGCTGTCTGCTGGGTTTGTATTTCACATGCCTGCTGCTCATCCAGATTGGCCAGGTCACTGCTGGAGTTCTCATTTACTTCCAAAGAGATCAGTAGAAACACGAGATGTCCAACATCATAAAGGACATGATCGTCAACTACACTGGTGTGAACAGGACTGCCGAGAGCACGTGGGATTACGTCCAGAAGTCGATGAAGTGCTGTGGGTGGACTGGGCCTGGAAACTGGTCTGACAACCTCATAATCAAGAAAAGGTTCCAGAACCTCTACCCTTGCTCCTGTCGCAACGAGTCCCTGCCCGGCTCGGACATCAA]
[+] EMBL CA589499 [GCCACCCGAGAAGTTCGACTCGCAACCATCTGTCAACCCTTTTCTACCTTTAAAAGGACCAGCCATGGGTAAAGGTTGCATCACAGTCACCAAATACTTCCTGTTCCTCTTCAACCTCCTCTTCTTTGTTTTTGGAGGTCTGATCATGGGCTTTGGCCTGTGGGTCCTGCTTGACAACCAGAGCTTCATCGCTGTCCTCCAGGAGTCATCAGACACAGTGAAAGTGGCTGCCTACATCCTCATTGGAGTGGGCTCCTTGTCCATGGCTCTGGGCTTCTTTGGCTGCATAGGAGCCATCTATGAAATCCGCTGTCTGCTGGGTTTGTATTTCACATGCCTGCTGCTCATCCTGATTGGCCAGGTCACTGCTGGAGTTCTCATTTACTTCCAAAGAGATCAGTTGAAACACGAGATGTCCAACATCATAAAGGACATGATCGTCAACTACACTGGTGTGAACAGGACTGCCGAGAGCACGTGGGATTACGTCCAGAAGTCGATGAAGTGCTGTGGGTGGACTGGGCCTGGAAACTGGTCTGACAACCTCATAATCAAGAACAGCTTCCAGAACCTCTACCCTTGCTCCTGTCGCAACGAGTCCCTGCCCGGCTCGGACATCAA]
[+] EMBL BU806861 [ GGTAAAGGTTGCATCACAGTCACCAAATACTTCCTGTTCCTCTTCAACCTCCTCTTCTTTGTTTTTGGAGGTCTGATCATGGGCTTCGGCCTGTGGGTCCTGCTTGACAACCAGAGCTTCATCGCCGTCCTCCAGGAGTCATCAGACACAGTGAAAGTGGCTGCCTACTTCTTTTTTGGAGTGGGCTCCTTGTCCATGGCTCTGGGCTTCTTTGGCTGCATAGGAGCCATCTATGAAATCCGCTGTCTGCTGGGTTTGTATTTCACATGCCTGCTGCTCATCCAGATTGGCCAGGTCACTGCTGGAGTTCTCATTTACTTCCAAAGAGATCAGTAGAAACACGAGATGTCCAACATCATAAAGGACATGATCGTCAACTACACTGGTGTGAACAGGACTGCCGAGAGCACGTGGGATTACGTCCAGAAGTCCATGAAGTGCTGTGGGTGGACTGGGCCTGGAAACTGGTCTGACACCCTCATAATCAAGAAACAGTTTCAGAACCTC ]
consensusID : consensus_1772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence
[CGCCGCCCGAGAAGTTCGTCTCGCAACCATCTGTCAACCCTTTTCTACCTTTAAAAGGACCAGCCATGGGTAAAGGTTGCATCACAGTCACCAAATACTTCCTGTTCCTCTTCAACCTCCTCTTCTTTGGTTGAGATTAGACCAGACTACTTAAACCCTGTCTGCAAGAGTATCCAGACTGTTCCAATGAAGCTAAGAGATCAAGCCAGTGGAGGTAGGGGGAGCCAGGAAGTGGTGGGCTAATGATGGCTGCTGGGTGCTGCGAAGTCCCTCTGAAGGATCAGCTCTTAACCAGGACTTTAAGGACTGTTGTAGGCCCTGAGGGGGTGGCAGAGCATGAGGAGAAGCAGATGACTCAAAAGAACCTCTCATCTTTGGATTTTGCCCCATTAGAGTGGGACACATGGTCTAAATGGGGGTTCTTTTAATAACATACAAGTTGAGCTCTTTATAACCTTGTTTTACAGCCACAGAGGTTGAGGCTGAATATTTGTTTAGGCATAACTTTAGCCCTTTAATAACCTTTTAGCTGGAATAGTTTCAGATCCCACCTAGCCAGT]
[+] EMBL BU807505 [CGCCGCCCGAGAAGTTCGTCTCGCAACCATCTGTCAACCCTTTTCTACCTTTAAAAGGACCAGCCATGGGTAAAGGTTGCATCACAGTCACCAAATACTTCCTGTTCCTCTTCAACCTCCTCTTCTTTGGTTGAGATTAGACCAGACTACTTAAACCCTGTCTGCAAGAGTATCCAGACTGTTCCAATGAAGCTAAGAGATCAAGCCAGTGGAGGTAGGGGGAGCCAGGAAGTGGTGGGCTAATGATGGCTGCTGGGTGCTGCGAAGTCCCTCTGAAGGATCAGCTCTTAACCAGGACTTTAAGGACTGTTGTAGGCCCTGAGGGGGTGGCAGAGCATGAGGAGAAGCAGATGACTCAAAAGAACCTCTCATCTTTGGATTTTGCCCCATTAGAGTGGGACACATGGTCTAAATGGGGGTTCTTTTAATAACATACAAGTTGAGCTCTTTATAACCTTGTTTTACAGCCACAGAGGTTGAGGCTGAATATTTGTTTAGGCATAACTTTAGCCCTTTAATAACCTTTTAGCTGGAATAGTTTCAGATCCCACCTAGCCAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1772#0 -GCCACCCGAGAAGTTCGACTCGCAACCATCTGTCAACCCTTTTCTACCTTTAAAAGGAC 59
consensus_1772#1 CGCCGCCCGAGAAGTTCGTCTCGCAACCATCTGTCAACCCTTTTCTACCTTTAAAAGGAC 60
*** ************* *****************************************
consensus_1772#0 CAGCCATGGGTAAAGGTTGCATCACAGTCACCAAATACTTCCTGTTCCTCTTCAACCTCC 119
consensus_1772#1 CAGCCATGGGTAAAGGTTGCATCACAGTCACCAAATACTTCCTGTTCCTCTTCAACCTCC 120
************************************************************
consensus_1772#0 TCTTCTTTGTTTTTGGAGGTCTGATCATGGGCTTCGGCCTGTGGGTCCTGCTTGACAACC 179
consensus_1772#1 TCTTCTTTGGTT---GAGATTAGACCA--GACTACT-----TAAACCCTGTCTG----CA 166
********* ** *** * ** ** * ** * * **** ** *
consensus_1772#0 AGAGCTTCATCGCCGTCCTCCAGGAGTCATCAGACACAGTGAAAGTGGCTGCCTACATCC 239
consensus_1772#1 AGAGTATCCAGACTGTTCCAATGAAGCTAAGAGATCAAGCCAGTGGAGGTAGGGGGAGCC 226
**** ** * ** * * ** * *** ** * * * * * **
consensus_1772#0 TCATTGGAGTGGGCTCCTTGTCCATGGCTCTGGGCTTCTTTGGCTGCATAGGAGCCATCT 299
consensus_1772#1 AGGAAGTGGTGGGCTAAT----GATGGCTGCTGGGT------GCTGCGAAG--TCCCTCT 274
* ******* * ****** ** * ***** ** ** ***
consensus_1772#0 ATGAAATCCGCTGTCTGCTGGGTTTGTATTTCACATGCCTGCTGCTCATCCAGATTGGCC 359
consensus_1772#1 GAAGGATCAGCTCTTAACCAGGACTTTA------AGGACTGTTGTAGGCCCTGAGGGGGT 328
*** *** * * ** * ** * * *** ** ** ** **
consensus_1772#0 AGGTCACTGCTGGAGTTCTCATTTACTTCCAAAGAGATCAGTAGAAACACGAGATGTCCA 419
consensus_1772#1 GG--CAGAGCATGAGGAGAAGCAGATGACTCAAAAGAACCTCTCATCTTTGGATTTTGCC 386
* ** ** *** * * ** *** * * * * * *
consensus_1772#0 ACATCATAAAGGACATGATCGTCAACTACACTGGTGTGAACAGGACTGCCGAGAGCACGT 479
consensus_1772#1 CCATTAGAGTGGGACACATGGTC---TAAATGGGGGTT-------CTTTTAATAACATAC 436
*** * * ** ** *** ** * ** ** ** * * **
consensus_1772#0 GGGATTACGTCCAGAAGTCGATGAAGTGCTGTGGGTG-GACTGGGCCTGGAAACTGGTCT 538
consensus_1772#1 AAGTTGAGCTCTTTATAACCTTGTTTTACAGCCACAGAGGTTGAGGCTGAATATTTGTTT 496
* * * ** * * ** * * * * * ** * *** * * * ** *
consensus_1772#0 G---ACAACCTCATAATCAAGAAAAGGTTCCAGAACCTCTACCCTTGCTCCTGTCGCAAC 595
consensus_1772#1 AGGCATAACTTTAGCCCTTTAATAACCTTTTAGCTGGAATAGTTTCAGATCCCACCTAGC 556
* *** * * * ** ** ** ** * * * * *
consensus_1772#0 GAGTCCCTGCCCGGCTCGGACATCAA 621
consensus_1772#1 CAGT---------------------- 560
***
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |