These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 802 fasta sequence [CATACAGAGTGATGAAATCGTATGGGGAAAGGTGTGGCCACCTTATCCAAACGTCACTGTGAATGACTCACTGGACTGGGATACCCAGATAGAGTTATACAGATCTTACACTGCTTTCCCTGACTTCCTGCGACCTGCCACAGCAAAGTGGTGGTTTCAAGAAATCAAGGACTTCTATGACAAGATCATGAAGTTTGACGGCTTGTGGATTGACATGAATGAACCTGTCACTTTCGTCTCTGGTACGGTTGGAAAAAAATGTCTTGGTGATCCACTTTTTGAAAACCCTCCTTACATGCCAGCTTTGGAAAGCAGATATCTTGGCCTAAACCACAAGACACTGTGCATGAACAGTGAGCAGATACTCAGTGATGGGAAGAAAGTGCGACACTACGATGTCCACAGCCTGTACGGATGGTCCCAGACCCAGCCTACCTATGATGCTATGCTGAACGTGACAGGCAAGAGAGGCATTGTGGTGACCAGGTCCACCTTCCCATCCAGTGGAAAATGGGCTGGACATTGGCTGGGAGACAACACTGCAGGCTGGGACCAGTTATACAAATCTATAATAGGCATGATGGAGTTCAGCCTGTTTGGTATCTCTTATACTGGGGGCCTGATATCTGTGGCTTCTTCAATGGAGGCGAGTATGAAATGGGTCTTCGCTGGATGCACCCGGGGGCATTTTACCCTTACTCACGCAGCCACAATGGGAAGGGAATTCGGGAGACAAGACCCTGTTGCCTGGGATGCCCAGTTTGCCAATTACTCCCGGGATGTCCTGAACATCCGATACTCT] [+] EMBL CA591435 [CATACAGAGTGATGAAATCGTATGGGGAAAGGTGTGGCCACCTTATCCAAACGTCACTGTGAATGACTCACTGGACTGGGATACCCAGATAGAGTTATACAGATCTTACACTGCTTTCCCTGACTTCCTGCGACCTGCCACAGCAAAGTGGTGGTTTCAAGAAATCAAGGACTTCTATGACAAGATCATGAAGTTTGACGGCTTGTGGATTGACATGAATGAACCTGTCACTTTCGTCTCTGGTACGGTTGGAAAAAAATGTCTTGGTGATCCACTTTTTGAAAACCCTCCTTACATGCCAGCTTTGGAAAGCAGATATCTTGGCCTAAACCACAAGACACTGTGCATGAACAGTGAGCAGATACTCAGTGATGGGAAGAAAGTGCGACACTACGATGTCCACAGCCTGTACGGATGGTCCCAGACCCAGCCTACCTATGATGCTATGCTGAACGTGACAGGCAAGAGAGGCATTGTGGTGACCAGGTCCACCTTCCCATCCAGTGGAAAATGGGCTGGACATTGGCTGGGAGACAACACTGCAGGCTGGGACCAGTTATACAAATCTATAATAGGCATGATGGAGTTCAGCCTGTTTGGTATCTCTTATACTGGGG CTGATATCTGTGGCTTCTTCAATGATGCCGAGTATGAAATGTGTCTTCGCTGGATGCACCTGGGTGCATTTTACCCTTACTCACGCAACCACAATGGCAAGGG ATTCCGGAGACAAGACCCTGTTGCCTGGGATGCCCAGTTTGCCAATTACTCCCGGGATGTCCTGAACATCCGATACTCT] [+] EMBL CA591417 [ TAGAGTTATACAGATCTTACACTGCTTTCCCTGACTTCCTGCGACCTGCCACAGCAAAGTGGTGGTTTCAAGAAATCAAGGACTTCTATGACAAGATCATGAAGTTTGACGGCTTGTGGATTGACATGAATGAACCTGTCACTTTCGTCTCTGGTACGGTTGGAAAAAAATGTCTTGGTGATCCACTTTTTGAAAACCCTCCTTACATGCCAGCTTTGGAAAGCAGATATCTTGGCCTAAACCACAAGACACTGTGCATGAACAGTGAGCAGATACTCAGTGATGGGAAGAAAGTGCGACACTACGATGTCCACAGCCTGTACGGATGGTCCCAGACCCAACCTACCTATGATGCTATGCTGAACGTGACAGGCAAAAGAGGCATTGTGGTGACCAGGTTCACCTTCCCATCCAGTGGAAAATGGGCTGGACATTGGCTGGGAGACAACACTGCAGGCTGGGACCAGTTATACAAATCTATAATAGGCATGATGGAGTTCAGCCTGTTTGGTATCTCTTATACTGGGGGCCTGATATCTGTGGCTTCTTCAATGGATGCGAGTATGAAATGGGTCTTCCCTGGATGCACCCTGGGGCATTTTACCCTTACTCACGCAGCCCCCATGGGAAGGGAATTCGGGAGACAAGACCCTGTT ] consensusID : consensus_1784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [GAGCTGAGCTTTTACATACTCAGGCATCTCCCAACAGTCAAGTGTATTGAGGGCGTGTCCTGCCACCAGTCACAAACCAAGAGCTTCTCTCATGAACATTCAGCATATCTTAACACTCTCCTCCACAGACTGGGGCTGATATCTGTGGCTTCTTCAATGATGCCGAGTATGAAATGTGTCTTCGCTGGATGCACCTGGGTGCATTTTACCCTTACTCACGCAACCACAATGGCAAGGGATTCCGGAGACAAGACCCTGTTGCCTGGGATGCCCAGTTTGCCAATTATTCCCGGGATGTCCTGAACATCCGATACTCTCTCCTGCCGTATTTGTACACACTGATGTTTGAAGCTCACACCANAGGAAGCACTGTCATCAGACCCATGTTGCATGAGTTTGTCCAGGATACANACACCTGGAATATCACANACAGTTCCTCTGGGGGACTGCCATGCTGATCACACCCGCCCTCGACAGGGGAGTCGTAN] [+] EMBL FR0056874 [GAGCTGAGCTTTTACATACTCAGGCATCTCCCAACAGTCAAGTGTATTGAGGGCGTGTCCTGCCACCAGTCACAAACCAAGAGCTTCTCTCATGAACATTCAGCATATCTTAACACTCTCCTCCACAGACTGGGGCTGATATCTGTGGCTTCTTCAATGATGCCGAGTATGAAATGTGTCTTCGCTGGATGCACCTGGGTGCATTTTACCCTTACTCACGCAACCACAATGGCAAGGGATTCCGGAGACAAGACCCTGTTGCCTGGGATGCCCAGTTTGCCAATTATTCCCGGGATGTCCTGAACATCCGATACTCTCTCCTGCCGTATTTGTACACACTGATGTTTGAAGCTCACACCANAGGAAGCACTGTCATCAGACCCATGTTGCATGAGTTTGTCCAGGATACANACACCTGGAATATCACANACAGTTCCTCTGGGGGACTGCCATGCTGATCACACCCGCCCTCGACAGGGGAGTCGTAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1784#0 CATACAGAGTGATGAAATCGTATGGGGAAAGGTGTGGCCACCTTATCCAAACGTCACTGT 60 consensus_1784#1 ------------------------------------------------------------ consensus_1784#0 GAATGACTCACTGGACTGGGATACCCAGATAGAGTTATACAGATCTTACACTGCTTTCCC 120 consensus_1784#1 ------------------------------------------------------------ consensus_1784#0 TGACTTCCTGCGACCTGCCACAGCAAAGTGGTGGTTTCAAGAAATCAAGGACTTCTATGA 180 consensus_1784#1 ------------------------------------------------------------ consensus_1784#0 CAAGATCATGAAGTTTGACGGCTTGTGGATTGACATGAATGAACCTGTCACTTTCGTCTC 240 consensus_1784#1 -------------------GAGCTGAGCTTTTACATACTCAGGCATCTCCCAACAGTCAA 41 * ** * ** **** * * ** * *** consensus_1784#0 TGGTACGGTTGGAAAAAAATGTCTTGGTGATCCACTTTTTGAAAACCCTCCTTACATGCC 300 consensus_1784#1 GTGTA---TTGAGGGCGTGTCCTGCCACCAGTCACAAACCAAGAGCTTCTCTCATG---- 94 *** *** * * *** * * * ** * consensus_1784#0 AGCTTTGGAAAGCAGATATCTTGGCCTAAACCACAAGACACTGTGCATGAACAGTGAGCA 360 consensus_1784#1 AACATT---CAGC--ATATCTTAACACTCTCCTCCACAGACTGGGGCTGATATCTGTG-G 148 * * ** *** ******* * ** * * * **** * *** ** * consensus_1784#0 GATACTCAGTGATGGGAAGAAAGTGCGACACTACGATGTCCACAGCCTGTACGGATGGTC 420 consensus_1784#1 CTTCTTCAATGATGCCG----AGTATGAAAT----GTGTCTTCGCT------GGATGCAC 194 * *** ***** *** ** * **** * ***** * consensus_1784#0 CCAGACCCAGCCTACCTATGATGCTATGCTGAACGTGACAGGCAAGAGAGGCATTGTGGT 480 consensus_1784#1 CTGGGTGCATTTTACCCTTACT--CACGC--AACCACAATGGCAAGGGA----TTCCGGA 246 * * ** **** * * * ** *** * ****** ** ** ** consensus_1784#0 GACCAGGTCCACCTTCCCATCCAGTGGAAAATGGGCTGGACATTGGCTGGGAGAC---AA 537 consensus_1784#1 GACAAGACCCTGTTGCCTG--GGATGCCCAGTTTGCCAATTATTCCCGGGATGTCCTGAA 304 *** ** ** * ** ** * * ** *** * ** * * ** consensus_1784#0 CACTGCAGGCTGGGACCAGTTATACAAATCTATAATAGGCATGATGGAGTTCAGCCTGTT 597 consensus_1784#1 CATCCGATACTCTCTCCTGCCGTATTTGTACACACTGATGTT--TGAAGCTCACACCANA 362 ** * ** ** * ** * * * * * ** ** *** * consensus_1784#0 TGGTATCTCTTATACTGGGGGCCTGATATCTGTGGCTTCTTCAATGGAGGCGAGTATGAA 657 consensus_1784#1 -GGAAGCACTGTCATCAGACCCATGTTGCATG-AGTTTGTCCAGGATACANACACCTGGA 420 ** * * ** * * * ** * ** * ** * ** * ** * consensus_1784#0 ATGGGTCTTCGCTGGATGCACCCGGGGGCATTTTACCCTTACTCACGCAGCCACAATGGG 717 consensus_1784#1 ATA---TCACANACAGTTCCTCTGGGGGACTGCCATGCTGAT---CACACCCGCCCTCGA 474 ** * * * * ***** * * ** * * ** ** * * * consensus_1784#0 AAGGGAATTCGGGAGACAAGACCCTGTTGCCTGGGATGCCCAGTTTGCCAATTACTCCCG 777 consensus_1784#1 CAGGGGAGTCGTAN---------------------------------------------- 488 **** * *** consensus_1784#0 GGATGTCCTGAACATCCGATACTCT 802 consensus_1784#1 ------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |