These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 812 fasta sequence [CCATCAAAGGGGACACCTCAGGCCACTTCAGAAGGCTTCTGATCTCTCTCGCTCAGGGTAACCGTGATGAAAGGGAAAACGTCGACATTGCTCTGGCTAAACAGGACGCTCAGGCACTGTACGCTGCTGGAGAAAACAAGCTGGGGACAGACGAGTCCAAATTCAATGCCATTTTGTGTGCCAGGAGCAAGCCTCATCCCAGAGCAGTGTTTCAGGAGTACCAGAGCATGTGTGGCAGAGATGTGGAGAAGAGCATCGGCAGGGAGATGTCAGGAGATCTGGAGAGTGGCATGTTGGCAGTAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGGCCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCGAGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACACAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAGGCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATATCAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACTCTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCAAAAAGGTTTATTTTTATCCTATATTTTTGCAAAACATTAGATATTTGAATATAGAAGGCCATCCAATAGAGTTGCTGGAAAATACATATGAATTCATT] [+] EMBL BU806547 [CCATCAAAGGGGACACCTCAGGCCACTTCAGAAGGCTTCTGATCTCTCTCGCTCAGGGTAACCGTGATGAAAGGGAAAACGTCGACATTGCTCTGGCTAAACAGGACGCTCAGGCACTGTACGCTGCTGGAGAAAACAAGCTGGGGACAGACGAGTCCAAATTCAATGCCATTTTGTGTGCCAGGAGCAAGCCTCATCCCAGAGCAGTGTTTCAGGAGTACCAGAGCATGTGTGGCAGAGATGTGGAGAAGAGCATCGGCAGGGAGATGTCAGGAGATCTGGAGAGTGGCATGTTGGCAGTAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGGCCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCGAGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACACAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTA ] [+] EMBL BU807773 [ AGATGTCAGGAGATCTGGAGAGTGGCATGTTGGCAGTAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGGCCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCGAGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACACAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAGGCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATATCAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACTCTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCAAAAAGGTTTATTTTTATCCTATATTTTTGCAAAACATTAGATATTTGAATATAGAAGGCCATCCAATAGAGTTGCTGGAAAATACATATGAATTCATT] consensusID : consensus_1786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GGTGTTAGCCGATAAGTACAAGAACATTAACCCAGATGGCAAACCCAAATAAGCTTCAAAAATATATCAGAAGTGCAGATGGGGTCGCTGTGAAGGTGTTGAAATGTTGACTAATGCAGCTGTAATATTGCTCCTTTCATCCTGGTACTTTTTTTTTTCTTCCGCCCTTTTTTTTTTGCAGTGGTGAATATTTTTTGAAGGGTAAATTAACGTGTTCACTGAGCTCCTGTGTGCCTTCCCATTTCAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGGCCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCGAGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACACAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAGGCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATATCAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACTCTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCAAAAAGGT] [-] EMBL CA588685 [GGTGTTAGCCGATAAGTACAAGAACATTAACCCAGATGGCAAACCCAAATAAGCTTCAAAAATATATCAGAAGTGCAGATGGGGTCGCTGTGAAGGTGTTGAAATGTTGACTAATGCAGCTGTAATATTGCTCCTTTCATCCTGGTACTTTTTTTTTTCTTCCGCCCTTTTTTTTTTGCAGTGGTGAATATTTTTTGAAGGGTAAATTAACGTGTTCACTGAGCTCCTGTGTGCCTTCCCATTTCAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGGCCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCGAGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACACAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAGGCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATATCAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACTCTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCAAAAAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1786#0 CCATCAAAGGGGACACCTCAGGCCACTTCAGAAGGCTTCTGATCTCTCTCGCTCAGGGTA 60 consensus_1786#1 ------------------------------------------------------GGTGTT 6 * ** consensus_1786#0 ACCGTGATGAAAGGGAAAACGTCGACATTGCTCTGGCTAAACAGGACGCTCAGGCACTGT 120 consensus_1786#1 AGC-CGATAAGTACAAGAACATTAACCCAGAT--GGCAAACCCAAATAAGCTTCAAAAAT 63 * * *** * * *** * ** * * *** ** * * * * * consensus_1786#0 ACGCTGCTGGAGAAAACAAGCTGGGGACAGACGAGTCCAAATTCAATGCCATTTTGTGTG 180 consensus_1786#1 ATATCAGAAGTGCAGATGGGGTCGCTGTGAAGGTGTTGA-----AATGTTGACTAATGCA 118 * * * * * * * * * * ** * **** * ** consensus_1786#0 CCAGGAGCAAGCCTCATCCCAGAGCAGTGTTTCAGGAGTACCAGAGCATGTGTGGCAGAG 240 consensus_1786#1 GCTGTAATATTGCTCCTTTCATCCTGGTACTTTTTTTTTTCTTCCGCCCTTTTTTTTTTG 178 * * * * *** * ** ** ** * * ** * * * consensus_1786#0 ATGTGGAGAAGAGCATCGGCAGGGAGATGTCAGGAGATC--TGGAGAGTGGCATG--TTG 296 consensus_1786#1 CAGTGGTGAATATTTTTTGAAGGGTAAATTAACGTGTTCACTGAGCTCCTGTGTGCCTTC 238 **** *** * * * **** * * * * * ** ** * ** ** consensus_1786#0 GCAGT--AGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGG 354 consensus_1786#1 CCATTTCAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGG 298 ** * ***************************************************** consensus_1786#0 CCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCG 414 consensus_1786#1 CCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCG 358 ************************************************************ consensus_1786#0 AGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACA 474 consensus_1786#1 AGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACA 418 ************************************************************ consensus_1786#0 CAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAG 534 consensus_1786#1 CAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAG 478 ************************************************************ consensus_1786#0 GCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATAT 594 consensus_1786#1 GCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATAT 538 ************************************************************ consensus_1786#0 CAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACT 654 consensus_1786#1 CAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACT 598 ************************************************************ consensus_1786#0 CTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCA 714 consensus_1786#1 CTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCA 658 ************************************************************ consensus_1786#0 AAAAGGTTTATTTTTATCCTATATTTTTGCAAAACATTAGATATTTGAATATAGAAGGCC 774 consensus_1786#1 AAAAGGT----------------------------------------------------- 665 ******* consensus_1786#0 ATCCAATAGAGTTGCTGGAAAATACATATGAATTCATT 812 consensus_1786#1 -------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |