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Takifugu rubripes
cluster # 1795 cluster # 1795       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1795#0 length = 709 sequences # 2  
consensus_1795#1 length = 618 sequences # 1  

consensusID : consensus_1795#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 709
fasta sequence
                              [AATAATCAGGTTTTCTGCGCGACATACGTGCTGGATACGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGGTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGGCATGATAGCTTTGCCAAAGACAGGAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAACGTAGCCGCTCTCGCCTCCGGTCCGCCTCGAGGAGGAGCCGTCACCGCAGGAGCAGGAAAAGATCCAGGAGTTTTGAGGATGATGACGAGGGTCACCTCATCTATCACATTGGAGACATGCTGAGAGCCAGATATGAGATTGTGTGTACACTAGGAGAAGGTGCCTTTGGGAAGGTGGTTGAATGCATTGATCATAAATATAAAGATGCCCATGTGGCTCTGAAGATCATAAAAAATATTGATCGTTACCGTGAGGCTGCTTTGTCAGAGGTGCAGGTGCTGGAGCAGCTGAAAGCTCTC]

[+] EMBL FR0058512            [AATAATCAGGTTTTCTGCGCGACATACGTGCTGGATACGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGGTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGGCATGATAGCTTTGCCAAAGACAGGAGACCGCGACTGGCACCACTACAGC                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA590295             [                                                                                                                                                                                                                                                          GACACAATATGGACATTGCCTATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACA GAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAACGTAGCCGCTCTCGCCTCCGGTCCGCCTCGAGGAGGAGCCGTCACCGCAGGAGCAGGAAAAGATCCAGGAGTTTTGAGGATGATGACGAGGGTCACCTCATCTATCACATTGGAGACATGCTGAGAGCCAGATATGAGATTGTGTGTACACTAGGAGAAGGTGCCTTTGGGAAGGTGGTTGAATGCATTGATCATAAATATAAAGATGCCCATGTGGCTCTGAAGATCATAAAAAATATTGATCGTTACCGTGAGGCTGCTTTGTCAGAGGTGCAGGTGCTGGAGCAGCTGAAAGCTCTC]


>consensus_1795#0 AATAATCAGGTTTTCTGCGCGACATACGTGCTGGATACGATGCGCCATTCAAAGAGGATG CGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAA CGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCAT CAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATG GTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGGCATGATAGCTTTGCC AAAGACAGGAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAG TGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAACGTAGCCGCTC TCGCCTCCGGTCCGCCTCGAGGAGGAGCCGTCACCGCAGGAGCAGGAAAAGATCCAGGAG TTTTGAGGATGATGACGAGGGTCACCTCATCTATCACATTGGAGACATGCTGAGAGCCAG ATATGAGATTGTGTGTACACTAGGAGAAGGTGCCTTTGGGAAGGTGGTTGAATGCATTGA TCATAAATATAAAGATGCCCATGTGGCTCTGAAGATCATAAAAAATATTGATCGTTACCG TGAGGCTGCTTTGTCAGAGGTGCAGGTGCTGGAGCAGCTGAAAGCTCTC



consensusID : consensus_1795#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence
                              [TTTCCAGGACTTAATAATCACCACAATTAGCAGCGTAAACACGCATCTCTAAATTTTCTTTGTATAAATCCAATCTTACAAATCGCTTCATACTAGAACTACTCCTCCACCAGCGAGCTAGCTTCGCGGAATATACTCTTTTTAACATCCTATTAATGATCAACGTTGAAACCTTATTTTACAGTTAGGAAACATTGTTTGGACGCTGCACAGCCTGTATACGACTGCTGCAACCAGTCAGCAAATATGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGTTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACAGAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAA]

[+] EMBL CA333305             [TTTCCAGGACTTAATAATCACCACAATTAGCAGCGTAAACACGCATCTCTAAATTTTCTTTGTATAAATCCAATCTTACAAATCGCTTCATACTAGAACTACTCCTCCACCAGCGAGCTAGCTTCGCGGAATATACTCTTTTTAACATCCTATTAATGATCAACGTTGAAACCTTATTTTACAGTTAGGAAACATTGTTTGGACGCTGCACAGCCTGTATACGACTGCTGCAACCAGTCAGCAAATATGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGTTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACAGAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAA]


>consensus_1795#1 TTTCCAGGACTTAATAATCACCACAATTAGCAGCGTAAACACGCATCTCTAAATTTTCTT TGTATAAATCCAATCTTACAAATCGCTTCATACTAGAACTACTCCTCCACCAGCGAGCTA GCTTCGCGGAATATACTCTTTTTAACATCCTATTAATGATCAACGTTGAAACCTTATTTT ACAGTTAGGAAACATTGTTTGGACGCTGCACAGCCTGTATACGACTGCTGCAACCAGTCA GCAAATATGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATAC TGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAG AGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTG GAAGCTCGCAACTTAAACCAAAGGTTGATGTTTTGGGAAGGACACAATATGGACATTGCC TATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACAGAGACCGCGACTGGCACCACTAC AGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCAC AGAGACAGGAAGCAGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1795#0      ------------------------------------------------------------
consensus_1795#1      TTTCCAGGACTTAATAATCACCACAATTAGCAGCGTAAACACGCATCTCTAAATTTTCTT 60
                                                                                  

consensus_1795#0      ------------------------------------------------------------
consensus_1795#1      TGTATAAATCCAATCTTACAAATCGCTTCATACTAGAACTACTCCTCCACCAGCGAGCTA 120
                                                                                  

consensus_1795#0      ------------------------------------------------------------
consensus_1795#1      GCTTCGCGGAATATACTCTTTTTAACATCCTATTAATGATCAACGTTGAAACCTTATTTT 180
                                                                                  

consensus_1795#0      ----------------------------AATAATCAGGTTTTCTGCGCGACATACGTGCT 32
consensus_1795#1      ACAGTTAGGAAACATTGTTTGGACGCTGCACAGCCTGTATACGACTGCTGCAACCAGTCA 240
                                                   * *  * *  *      **  **  *   * 

consensus_1795#0      G--GATACGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATAC 90
consensus_1795#1      GCAAATATGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATAC 300
                      *   *** ****************************************************

consensus_1795#0      TGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAG 150
consensus_1795#1      TGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAG 360
                      ************************************************************

consensus_1795#0      AGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTG 210
consensus_1795#1      AGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTG 420
                      ************************************************************

consensus_1795#0      GAAGCTCGCAACTTAAACCAAAGGTTGATGGTTTGGGAAGGACACAATATGGACATTGCC 270
consensus_1795#1      GAAGCTCGCAACTTAAACCAAAGGTTGATGTTTTGGGAAGGACACAATATGGACATTGCC 480
                      ****************************** *****************************

consensus_1795#0      TATGAAGAGGACAGGCATGATAGCTTTGCCAAAGACAGGAGACCGCGACTGGCACCACTA 330
consensus_1795#1      TATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACAG-AGACCGCGACTGGCACCACTA 539
                      ************** *********************** *********************

consensus_1795#0      CAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCA 390
consensus_1795#1      CAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCA 599
                      ************************************************************

consensus_1795#0      CAGAGACAGGAAGCAGCAACGTAGCCGCTCTCGCCTCCGGTCCGCCTCGAGGAGGAGCCG 450
consensus_1795#1      CAGAGACAGGAAGCAGCAA----------------------------------------- 618
                      *******************                                         

consensus_1795#0      TCACCGCAGGAGCAGGAAAAGATCCAGGAGTTTTGAGGATGATGACGAGGGTCACCTCAT 510
consensus_1795#1      ------------------------------------------------------------
                                                                                  

consensus_1795#0      CTATCACATTGGAGACATGCTGAGAGCCAGATATGAGATTGTGTGTACACTAGGAGAAGG 570
consensus_1795#1      ------------------------------------------------------------
                                                                                  

consensus_1795#0      TGCCTTTGGGAAGGTGGTTGAATGCATTGATCATAAATATAAAGATGCCCATGTGGCTCT 630
consensus_1795#1      ------------------------------------------------------------
                                                                                  

consensus_1795#0      GAAGATCATAAAAAATATTGATCGTTACCGTGAGGCTGCTTTGTCAGAGGTGCAGGTGCT 690
consensus_1795#1      ------------------------------------------------------------
                                                                                  

consensus_1795#0      GGAGCAGCTGAAAGCTCTC 709
consensus_1795#1      -------------------
                                         




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)