These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 697 fasta sequence [TTAATGTACGGCTTGGTACAAGAAACAGCGACCGTATCGTTTCAAGAAAATCTACATTCACAATGTCAGCTGCCGGTCCTGATAGTTCTGGTGCAATGTCGAGCAACAAGCGCCTCCAGCAGACCCAGGCTCAGGTGGATGAGGTGGTGGATATTATGCGCGTCAATGTAGACAAAGTGTTGGAGCGTGACCAGAAGTTGTCTGAACTCGACGACCGGGCAGATGCGCTGCAGGCCGGAGCCTCCCAGTTTGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGAAGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGAGTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACAGTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTTCTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGCGTGTGCGTGCGTGTGTGCGTGAGAGAGAGAGAGTCAATGCTTGGTAATAATTCTTTACACTGAATTTTACACTGAATGATGCAACAACGTATCCAACCATATTAAAGGTGTATCAATTAGCGTGCTATAACACATGCCAAAGAATAAAAGATGATGTAATTTA] [+] EMBL CA591521 [TTAATGTACGGCTTGGTACAAGAAACAGCGACCGTATCCTTTCAAGAAAATCTACATTCACAATGTCAGCTGCCGGTCCTGATAGTTCTGGTGCAATGTCGAGCAACAAGCGCCTCCAGCAGACCCAGGCTCAGGTGGATGAGGTGGTGGATATTATGCGCGTCAATGTAGACAAAGTGTTGGAGCGTGACCAGAAGTTGTCTGAACTCGACGACCGGGCAGATGCGCTGCAGGCCGGAGCCTCCCAGTTTGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGAAGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGAGTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACAGTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTTCTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGCGTGTGCGTGCGTGTGTGCGTGAGAGAGAGAGAGTCAATGCTTGGTAATAATTCTTTACACTGAATTTTACACTGAATGATGCAACAACGTATCCAACCATATTAAAGGTGTATCAATTAGCGTGCTATAACACATGCCAAAGAATAAAAGATGATGTAATTTA] [+] EMBL CA846507 [ CGTTTCAAGAAAATCTAC TTCAC TTGTCAGCTGCCGGTCCTGATAGTTCTGGTGCAATGTCGAGCAACAAGCGCCTCCAGCAGACCCAGGCTCAGGTGGATGAGGTGGTGGATATTATGCGCGTCAATGTAGACAAAGTGTTGGAGCGTGACCAGAAGTTGTCTGAACTCGACGACCGGGCAGATGCGCTGCAGGCCGGAGCCTCCCAGTTTGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGAAGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGAGTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACAGTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTTCTCA ] consensusID : consensus_1800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [CCTTGACGACCGGGCAGATGCGCTGCAGGCCGGAGCCTCCTCTTATGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGAAGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGAGTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACAGTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTTCTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGCGTGTGTGTGTGTGCGTGAGAGAGAGAGAGAGAGAGAGAGTCNATGCTTGGTAATAATTCTTTACACTGAATTTT] [+] EMBL CA846054 [CCTTGACGACCGGGCAGATGCGCTGCAGGCCGGAGCCTCCTCTTATGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGAAGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGAGTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACAGTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTTCTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGCGTGTGTGTGTGTGCGTGAGAGAGAGAGAGAGAGAGAGAGTCNATGCTTGGTAATAATTCTTTACACTGAATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1800#0 TTAATGTACGGCTTGGTACAAGAAACAGCGACCGTATCGTTTCAAGAAAATCTACATTCA 60 consensus_1800#1 ------------------------------------------------------------ consensus_1800#0 CAATGTCAGCTGCCGGTCCTGATAGTTCTGGTGCAATGTCGAGCAACAAGCGCCTCCAGC 120 consensus_1800#1 ------------------------------------------------------------ consensus_1800#0 AGACCCAGGCTCAGGTGGATGAGGTGGTGGATATTATGCGCGTCAATGTAGACAAAGTGT 180 consensus_1800#1 ------------------------------------------------------------ consensus_1800#0 TGGAGCGTGACCAGAAGTTGTCTGAACTCGACGACCGGGCAGATGCGCTGCAGGCCGGAG 240 consensus_1800#1 -------------------------CCTTGACGACCGGGCAGATGCGCTGCAGGCCGGAG 35 ** ******************************* consensus_1800#0 CCTCCCAGTTTGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGA 300 consensus_1800#1 CCTCCTCTTATGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGA 95 ***** * ************************************************** consensus_1800#0 AGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGA 360 consensus_1800#1 AGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGA 155 ************************************************************ consensus_1800#0 GTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACA 420 consensus_1800#1 GTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACA 215 ************************************************************ consensus_1800#0 GTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTT 480 consensus_1800#1 GTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTT 275 ************************************************************ consensus_1800#0 CTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGCGTGTGC 540 consensus_1800#1 CTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGTGTGTGC 335 ***************************************************** ****** consensus_1800#0 GTGCGTGTGTGCGTG----------------------------AGAGAGAGAGAGTCAAT 572 consensus_1800#1 GTGTGTGTGCGTGTGCGTGTGTGTGTGTGCGTGAGAGAGAGAGAGAGAGAGAGAGTCNAT 395 *** ***** * *** ************** ** consensus_1800#0 GCTTGGTAATAATTCTTTACACTGAATTTTACACTGAATGATGCAACAACGTATCCAACC 632 consensus_1800#1 GCTTGGTAATAATTCTTTACACTGAATTTT------------------------------ 425 ****************************** consensus_1800#0 ATATTAAAGGTGTATCAATTAGCGTGCTATAACACATGCCAAAGAATAAAAGATGATGTA 692 consensus_1800#1 ------------------------------------------------------------ consensus_1800#0 ATTTA 697 consensus_1800#1 ----- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |