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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[CATTGCGATTATCAGACGCCATGTGTTAAGCGTTTTCCGGGTTTCCAAGTGCACCTGCTTTTTCCCGACAGTGTCTGTTATGGTGGCAATAAAGATAAATGGCTGCGAGAGTGGGTCTTTCTCCTTCCTCGGCTACCTTACACATCAGCCCTTCTCACCATTTCCTTCTCTTTCTCCCTGGCTGTGGTCAGAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCAAGCAGTGGCTGAAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCAGACCCCATGGACATGGAGGTCTGCCTGACCAAAATCAGACACAAAGTGACTATGCACGACTTTGAATACCTCAAACTCCTGGGAAAAGGCACTTTTGGCAAAGTTATCCTGGTTAAGGAGAAGGCAACGGGACACTACTATGCCATGAAGATCCTAAAGAAGGAGGTGATTGTAGCAAAAGATGAAGTGGCTCACACACTCACAGAGAACAGAGTCCTCCAGAACTCAAAGCATCCATTCTTGACGGGACTG]
[+] EMBL BU807485 [CATTGCGATTATCAGACGCCATGTGTTAAGCGTTTTCCGGGTTTCCAAGTGCACCTGCTTTTTCCCGACAGTGTCTGTTATGGTGGCAATAAAGATAAATGGCTGCGAGAGTGGGTCTTTCTCCTTCCTCGGCTACCTTACACATCAGCCCTTCTCACCATTTCCTTCTCTTTCTCCCTGGCTGTGGTCAGAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCAAGCAGTGGCTGAAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCAGACCCCATGGACATGGAGGTCTGCCTGACCAAAATCAGACACAAAGTGACTATGCACGACTTTGAATACCTCAAACTCCTGGGAAAAGGCACTTTTGGCAAAGTTATCCTGGTTAAGGAGAAGGCAACGGGACACTACTATGCCATGAAGATCCTAAAGAAGGAGGTGATTGTAGCAAAAGATGAAGTGGCTCACACACTCACAGAGAACAGAGTCCTCCAGAACTCAAAGCATCCATTCTTGACGGGACTG]
consensusID : consensus_1805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[TTTGGGAGGTGTAGTGGAAGAAAGGCAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCACATTGTTGAAGGACTTATCAACTTATTATACCGCTGAAACATCTCCCTAGAATGAAACGGACGCGCTGTTGAATCCCTGCCCAGGTAAACGTCCGCGCTTCCGTCGCACGGTTAGACTACAAGAGGTCGACAGCTAGACAGGGTAACCACCGGTGACGAGGCGGTTGTAAACCCCAGGACCCCGTCTCAAGCTCCTCCACAGGGCTGAGGGAAGCAAACTTGGGAAACAAAGCTGCAGCTCTCCTTGTGGGAAACCTGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGTGATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAGGTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGTTGACCAGCTGGAATCCCCCTTAAATAACTTCTCTGTCGCACAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAA]
[+] EMBL CA591059 [TTTGGGAGGTGTAGTGGAAGAAAGGCAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCACATTGTTGAAGGACTTATCAACTTATTATACCGCTGAAACATCTCCCTAGAATGAAACGGACGCGCTGTTGAATCCCTGCCCAGGTAAACGTCCGCGCTTCCGTCGCACGGTTAGACTACAAGAGGTCGACAGCTAGACAGGGTAACCACCGGTGACGAGGCGGTTGTAAACCCCAGGACCCCGTCTCAAGCTCCTCCACAGGGCTGAGGGAAGCAAACTTGGGAAACAAAGCTGCAGCTCTCCTTGTGGGAAACCTGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGTGATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAGGTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGTTGACCAGCTGGAATCCCCCTTAAATAACTTCTCTGTCGCACAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAA]
consensusID : consensus_1805#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[CAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCACATTGTTGAAGGACTTATCAACTTATTATACCGCTGAAACATCTCCCTAGAATGAAACGGACGCGCTGTTGAATCCCTGCCCAGGTAACCACCGGTGACGAGGCGGTTGTAAACCCCAGGACCCCGTCTCAAGCTCCTCCACAGGGCTGAGGGAAGCAAACTTGGGAAACAAAGCTGCAGCTCTCCTTGTGGGAAACCTGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGTGATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAGGTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGTTGACCAGCTGGAAACCCCCTTAAATAACTTCTCTGTCGCACAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCAAGCAGTGGCTGAAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCA]
[+] EMBL BU806417 [CAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCACATTGTTGAAGGACTTATCAACTTATTATACCGCTGAAACATCTCCCTAGAATGAAACGGACGCGCTGTTGAATCCCTGCCCAGGTAACCACCGGTGACGAGGCGGTTGTAAACCCCAGGACCCCGTCTCAAGCTCCTCCACAGGGCTGAGGGAAGCAAACTTGGGAAACAAAGCTGCAGCTCTCCTTGTGGGAAACCTGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGTGATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAGGTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGTTGACCAGCTGGAAACCCCCTTAAATAACTTCTCTGTCGCACAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCAAGCAGTGGCTGAAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1805#1 TTTGGGAGGTGTAGTGGAAGAAAGGCAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCA 60
consensus_1805#2 -------------------------CAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCA 35
consensus_1805#0 ---------------------CATTGCGATTATCAGACGCCATGTGTTAAGCGTTTTCCG 39
* * * ** *** * * ** ***
consensus_1805#1 CATTGTTGAAGG-ACTTATCAACTTATTATACCG-CTGAAACA-TCTCCCTAGAATGAAA 117
consensus_1805#2 CATTGTTGAAGG-ACTTATCAACTTATTATACCG-CTGAAACA-TCTCCCTAGAATGAAA 92
consensus_1805#0 GGTTTCCAAGTGCACCTGCTTTTTCCCGACAGTGTCTGTTATGGTGGCAATAAAGATAAA 99
** * * ** * * * * * *** * * * ** * ***
consensus_1805#1 CGGACGCGCTGTTGAATCCCTGCCCAGGTAAACGTCCGCGCTTCCGTCGCACGGTTAGAC 177
consensus_1805#2 CGGACGCGCTGTTGAATCCCTGCCCAGGTAA----------------------------- 123
consensus_1805#0 TGGCTGCGAGAGTGGGTCTTTCTCCTTCCTCGGCTACCTTACACATCAGCCCTTCT---- 155
** *** ** ** * **
consensus_1805#1 TACAAGAGGTCGACAGCTAGACAGGGTAACCACCGGTGACGAGGCGGTTGTAAACCCCAG 237
consensus_1805#2 -----------------------------CCACCGGTGACGAGGCGGTTGTAAACCCCAG 154
consensus_1805#0 CACCATTTCCTTCTCTTTCTCCCTGGCTGTGGTCAGAATGCCAGCTGATGAAGACAGAAC 215
* * ** * ** * ** *
consensus_1805#1 GACCCCGTCTCAAGCTCCTCCACAGG-GCTGAGGGAAGCAAACTTGGGAAACAAAGCTGC 296
consensus_1805#2 GACCCCGTCTCAAGCTCCTCCACAGG-GCTGAGGGAAGCAAACTTGGGAAACAAAGCTGC 213
consensus_1805#0 GACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGC-GC 274
***** * *** ** ** **** * ** ** * * *** **
consensus_1805#1 AGCTCTCCTTGTGGGAAACC-TGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGT 355
consensus_1805#2 AGCTCTCCTTGTGGGAAACC-TGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGT 272
consensus_1805#0 A-CCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCAAGCAGT 333
* * *** **** * ** ** ** ** * * * * **
consensus_1805#1 GATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAG 415
consensus_1805#2 GATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAG 332
consensus_1805#0 GGCTG---------AAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCAGA 384
* ** * * ***** ** ** ** * ** * * ** ***
consensus_1805#1 GTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGT 475
consensus_1805#2 GTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGT 392
consensus_1805#0 CCCCATGGACATGGAGGTCTGCCTGACCAAAATCAGACACAAAGTGACTATGCACGACTT 444
* ** ** *** *** * ****** * *** ** *
consensus_1805#1 TGACCAGCTGGAATCCCCCTTAAATAACTTCTCTGTCGCA-CAATGCCAGCTGATGAAGA 534
consensus_1805#2 TGACCAGCTGGAAACCCCCTTAAATAACTTCTCTGTCGCA-CAATGCCAGCTGATGAAGA 451
consensus_1805#0 TGAATACCTCAAACTCCTGGGAAAAGGCACTTTTGGCAAAGTTATCCTGGTTAAGGAGAA 504
*** * ** ** ** *** * * ** * * ** * * * * ** *
consensus_1805#1 CAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCG 594
consensus_1805#2 CAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCG 511
consensus_1805#0 GGCAACGGGACACTACTATGCCATG-AAGATCCTAAAGAAGGAGGTGATTGTAGCAAAAG 563
**** ** * * *** * **** * ** ** * * *
consensus_1805#1 A--GCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAA-------------------- 632
consensus_1805#2 A--GCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCA 569
consensus_1805#0 ATGAAGTGGCTCACACACTCACAGAGAACAGAGTCCTCCAGAACTCAAAGCATCCATTCT 623
* * ** *** * * ** *
consensus_1805#1 -------------------------------------------------------
consensus_1805#2 AGCAGTGGCTGAAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCA 624
consensus_1805#0 TGACGGGACTG-------------------------------------------- 634
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |