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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1808#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 626 fasta sequence
[AAGAAACACAAAAAGCAAGAGGAGGGTGGCTGAGTTTAGGTCCATGTTCAGCAGCCCGTCCCATCACCCAACATGTACTCTTCAGCTGGAGTCTGTGGACCCAGTTCCAGCGTCTGTTGGTCGACGCTGGCGGGGATCCACGAAGCAGAACATGGTGGCTCTGCAGCAGCTGGAGGGAGATGATATTGTCTCCACTACAGTCAGTTCAGACGACCAAGCCCCTCGTATCAAAGCAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCTTCAGAGCTCCTGCAGCTGGAAACCTTAACTTGGGGCAGCGGTCTACCCGTGGGCCTGAGGGAAGTAGAGATGATACAGCATCAACAGGCGAAACGAGCCCTTGAAGCCAAACTTCCTCCTCTGGATGACCTCAGTCAGCTGGACAAAAGGAGAAAGATGATGGAGGAGATGGAGGCCCAAGAATGGGGCTTTCAGAGAGGCAGAAATCCAGAAGTTACATGAGGAGCGCCACGCTGTATCAGTGGACCTGCTGAAACAGAGAGTTATGAGTCAAGAGAAAGCCACCAATCAGACACTGAACCAACTA]
[+] EMBL CA333274 [AAGAAACACAAAAAGCAAGAGGAGGGTGGCTGAGTTTAGGTCCATGTTCAGCAGCCCGTCCCATCACCCAACATGTACTCTTCAGCTGGAGTCTGTGGACCCAGTTCCAGCGTCTGTTGGTCGACGCTGGCGGGGATCCACGAAGCAGAACATGGTGGCTCTGCAGCAGCTGGAGGGAGATGATATTGTCTCCACTACAGTCAGTTCAGACGACCAAGCCCCTCGTATCAAAGCAGGGGTCCAGACATATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCTTCAGAGCTCCTGCAGCTGGAAACCTTAACTTGGGGCAGCGGTCTACCCGTAGGCCTGAGGGAAGTAGAGATGATACAGCATCAACAGGCGAAACGAGCCCTTGAAGCCAAACTTCCTCCTCTGGATGACCTCAGTCAGCTGGACAAAAGGAGAAAGATGATGGAGGAGATAGAGGCCCAAGACT GGGCTTTCAGAGAGGCAGAAATCCAGAAGTTACATGAGGAGCGCCACGCTGTATCAGTGGACCTGCTGAAACAGAGAGTTATGAGTCAAGAGAAAGCCACCAATCAGACACTGAACCAACTA]
[+] EMBL CA590403 [ ATCACCCAACATGTACTCTTCAGCTGGAGTCTGTGGACCCAGTTCCAGCGTCTGTTGGTCGACGCTGGCGGGGATCCACGAAGCAGAACATGGTGGCTCTGCAGCAGCTGGAGGGAGATGATATTGTCTCCACTACAGTCAGTTCAGACGACCAAGTCCCTCGTATCAAAGCAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCTTCAGAGCTCCTGCAGCTGGAAACCTTAACTTGGGGCAGCGGTCTACCCGTGGGCCTGAGGGAAGTAGAGATGATACAGCATCAACAGGCGAAACGAGCCCTTGAAGCCAAACTTCCTCCTCTGGATGACCTCAGTCAGCTGGACAAAAGGAGAAAGATGATGGAGGAGATGGAGGCCCAAGAATGGGGCTTTCAAAGAGGC ]
consensusID : consensus_1808#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[GCTGTACGATAAAAATAAGCAAAATGAGCACAACGGCAACTCTTGAAATCCCTCCGAAGAAAACAGCTAAAGTAGTTAGACGACAACGCGCTTATGATTATCTGTACGATCCGGTTTTCACGGTTTCCTCCGAGGTGGACCATTACCGGGCCGGTCTCAAGGCCCAAGCAACCAAAGACCGATTTAGGAGGGTGGCTGAGTTTAAGTCCATGTTCAGCAGCCTGTCCCATCACCCAACATATTCGCTTCAGCTGGACTCTGTGGACCCAGTTCCAGCATTTATTGGCCGACGGTGGCGAGGCCCTACGGAGCAGAACATGGTGGCTCTGCAGCAGCTGGCGGGTGTTGTTCCAAATTCGCAGTCATGGTTGAAAAAGGAAGAGTGCCAAATAAGAGGAACTGATCGCTGGAAATACTTCAAATGCCCTCAGATTCCTTTTGAGCAGCAGCTTTCACCAGGTGGAATCTCTGCTTTGCCTGGAGATGATATTGTCTCCACTACAGTCAGTTCAGATGACCGACCCACTCATGTCACAGTAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCT]
[+] EMBL CA590602 [GCTGTACGATAAAAATAAGCAAAATGAGCACAACGGCAACTCTTGAAATCCCTCCGAAGAAAACAGCTAAAGTAGTTAGACGACAACGCGCTTATGATTATCTGTACGATCCGGTTTTCACGGTTTCCTCCGAGGTGGACCATTACCGGGCCGGTCTCAAGGCCCAAGCAACCAAAGACCGATTTAGGAGGGTGGCTGAGTTTAAGTCCATGTTCAGCAGCCTGTCCCATCACCCAACATATTCGCTTCAGCTGGACTCTGTGGACCCAGTTCCAGCATTTATTGGCCGACGGTGGCGAGGCCCTACGGAGCAGAACATGGTGGCTCTGCAGCAGCTGGCGGGTGTTGTTCCAAATTCGCAGTCATGGTTGAAAAAGGAAGAGTGCCAAATAAGAGGAACTGATCGCTGGAAATACTTCAAATGCCCTCAGATTCCTTTTGAGCAGCAGCTTTCACCAGGTGGAATCTCTGCTTTGCCTGGAGATGATATTGTCTCCACTACAGTCAGTTCAGATGACCGACCCACTCATGTCACAGTAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1808#0 -------AAGAAACACAAAAAGCAAGAGGAGGGTGGCTGAGTTT-AGGTCCATGTTCAGC 52
consensus_1808#1 GCTGTACGATAAAAATAAGCAAAATGAGCACAACGGCAACTCTTGAAATCCCTCCGAAGA 60
* *** * ** * * *** * *** ** * *** * **
consensus_1808#0 AGCCCGTCCCATCACCCA-ACATGTACTCTTCAGCTGGAGTCTGTG-GACCCAGTTCCAG 110
consensus_1808#1 AAACAGCTAAAGTAGTTAGACGACAACGCGCTTATGATTATCTGTACGATCCGGTTTTCA 120
* * * * * * ** ** * ***** ** ** ***
consensus_1808#0 CGTCTGTTGGTCGACGCTGGCGGGGATCCACGAAGCAGAACATGGTGGCTCTGCAGCAGC 170
consensus_1808#1 CGGTT-TCCTCCGA----GGTGGACCATTACCGGGCCGGTC-TCAAGGCCCA--AGCAAC 172
** * * *** ** ** ** ** * * * *** * **** *
consensus_1808#0 TGGAGGGAGAT----GATATTGTCTCCACTACAGTCAGT-TCAGACGACCAAGCCCCTCG 225
consensus_1808#1 CAAAGACCGATTTAGGAGGGTGGCTGAGTTTAAGTCCATGTTCAGCAGCCTGTCCCATCA 232
** *** ** ** ** * **** * * * ** *** **
consensus_1808#0 TATCAAAGCAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAG 285
consensus_1808#1 CCCAACATATTCGCTTCAGCTGGACTCTGTGGAC--CCAGTTCCAG-----CATTTATTG 285
* * * * *** ** * *** ** *** * ** *
consensus_1808#0 CCCTGAATATGTGCTGCAGCCAGGAGCAACACCTT-CAGAGCTCCTGCAGCTGG-AAACC 343
consensus_1808#1 GCCGACGGTGGCGAGGCCCTACGGAGCAGAACATGGTGGCTCTGCAGCAGCTGGCGGGTG 345
** * * ** ****** ** * * ** * ********
consensus_1808#0 TTAACTTGGGGCAGCGGTCTACCCGTGGGCCTGAGGGAAGTAGAGATGATACAGCATCAA 403
consensus_1808#1 TTGTTCCAAATTCGCAGTCA--TGGTTGAAAAAGGAAGAGTGCCAAATAAGAGGAACTGA 403
** ** *** ** * * *** * * * * *
consensus_1808#0 CAGGCGAAACGAGCCCTTGAAGCCAAACTTCCTCCTCTGGATGACCTCAGTCAGCTGGAC 463
consensus_1808#1 TCGCTGGAAATA-CTTCAAATGCCCTCAGATTCCTTTTGAGCAGCAGCTTTCACCAGGTG 462
* * ** * * * *** * * ** * * *** * **
consensus_1808#0 AAAAGGAGAAAGATGATGGAGGAGATGGAGGCCCAAGAATGGGGCTTTCAGAGAGGCAGA 523
consensus_1808#1 GAATCTCTGCTTTGCCTGGAGATGATATTGTCTCCACTACAGTCAGTTCAGAT-GACCGA 521
** ***** *** * * * * * * ****** * * **
consensus_1808#0 AATCCAGAAGTTACATGAGGAGCGCCACGCTGTATCAGTGGACCTGCTG---AAACAGAG 580
consensus_1808#1 CCCACTCATGTCACAGTAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGAC 581
* * ** *** *** * * * *** * * ** * * *****
consensus_1808#0 AGTTATGAGTCAAGAGAAAGCCACCAATCAGACACTGAACCAACTA 626
consensus_1808#1 CCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCT---- 623
** * * * * ** *** * ***
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |