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Takifugu rubripes
cluster # 1816 cluster # 1816       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1816#0 length = 469 sequences # 1  
 consensus_1816#1 length = 317 sequences # 2  
consensusID : consensus_1816#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence 
                              [CGTTTTACCTTGCACCAACAACACCCTTCACACCGCAGCACCGCTAGGAACTTCCACATTTTATACCTCATGCTGAAGGTGGATTTTAAACAGACGGCCGAGAGGACGCAGCGCTCGACATGGTCAATGTAAACACTCAAGTCAGTTCAAGTGTGGAATTTCCATTTGACTCCTCACCGGCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAGACAGAGCCACGGGTAAACACTACGGGGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGCATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGAGCGGGCATGAAGAAAGAAGCTGTGCAGAATGAGAGAGACAGAATCAGCAC]

[+] EMBL CA588347             [CGTTTTACCTTGCACCAACAACACCCTTCACACCGCAGCACCGCTAGGAACTTCCACATTTTATACCTCATGCTGAAGGTGGATTTTAAACAGACGGCCGAGAGGACGCAGCGCTCGACATGGTCAATGTAAACACTCAAGTCAGTTCAAGTGTGGAATTTCCATTTGACTCCTCACCGGCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAGACAGAGCCACGGGTAAACACTACGGGGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGCATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGAGCGGGCATGAAGAAAGAAGCTGTGCAGAATGAGAGAGACAGAATCAGCAC]




>consensus_1816#0
CGTTTTACCTTGCACCAACAACACCCTTCACACCGCAGCACCGCTAGGAACTTCCACATT
TTATACCTCATGCTGAAGGTGGATTTTAAACAGACGGCCGAGAGGACGCAGCGCTCGACA
TGGTCAATGTAAACACTCAAGTCAGTTCAAGTGTGGAATTTCCATTTGACTCCTCACCGG
CGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCT
GTGGAGACAGAGCCACGGGTAAACACTACGGGGCGTCCAGCTGCGACGGCTGCAAGGGCT
TCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGCA
TCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGAG
CGGGCATGAAGAAAGAAGCTGTGCAGAATGAGAGAGACAGAATCAGCAC

consensusID : consensus_1816#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 317
fasta sequence 
                              [TTCTGGAGTTCGAGAACATGCAGGGGCTGGGGCTGGGCACAGACTCCTCACCGGCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAGACAGAGCCACGGGCAAACACTACGGNGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGCATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGAGCGGGCATGAAGAAAGAAGCTGTG]

[+] EMBL FR0059148            [TTCTGGATTTCGAGAACATGCAGGTGCTGGGGCTGGGCACAGACTCCTCACCGGCGGAGACGCCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAGACAGAGCCACGGGTAAACACTACGGNGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTG                                                                                                       ]
[+] EMBL FR0059903            [    GGAGTTCGAGAACATGCAGGGGCTGCCGCTGGGCACAGACTCCTCACCGGCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAGACAGAGCCACGGGCAAACACTACGGGGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGCATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGAGCGGGCATGAAGAAAGAAGCTGTG]




>consensus_1816#1
TTCTGGAGTTCGAGAACATGCAGGGGCTGGGGCTGGGCACAGACTCCTCACCGGCGGAGA
CGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAG
ACAGAGCCACGGGCAAACACTACGGNGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCA
GACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGCATCGTGG
ACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGAGCGGGCA
TGAAGAAAGAAGCTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1816#0      CGTTTTACCTTGCACCAACAACACCCTTCACACCGCAGCACCGCTAGGAACTTCCACATT 60
consensus_1816#1      ------------------------------------------------------------
                                                                                  

consensus_1816#0      TTATACCTCATGCTGAAGGTGGATTTTAAACAGACGGCCGAGAGGACGCAGCGCTCGACA 120
consensus_1816#1      ------------------------------------------------------------
                                                                                  

consensus_1816#0      TGGTCAATGTAAACACTCAAGTCAGTTCAAGTG-TGGAATTTCCATTTGACTCCTCACCG 179
consensus_1816#1      -------TTCTGGAGTTCGAGAACATGCAGGGGCTGGGGCTGGGCACAGACTCCTCACCG 53
                             *        ** **    * ** * * ***   *       ************

consensus_1816#0      GCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATC 239
consensus_1816#1      GCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATC 113
                      ************************************************************

consensus_1816#0      TGTGGAGACAGAGCCACGGGTAAACACTACGGGGCGTCCAGCTGCGACGGCTGCAAGGGC 299
consensus_1816#1      TGTGGAGACAGAGCCACGGGCAAACACTACGGNGCGTCCAGCTGCGACGGCTGCAAGGGC 173
                      ******************** *********** ***************************

consensus_1816#0      TTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGC 359
consensus_1816#1      TTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGC 233
                      ************************************************************

consensus_1816#0      ATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGA 419
consensus_1816#1      ATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGA 293
                      ************************************************************

consensus_1816#0      GCGGGCATGAAGAAAGAAGCTGTGCAGAATGAGAGAGACAGAATCAGCAC 469
consensus_1816#1      GCGGGCATGAAGAAAGAAGCTGTG-------------------------- 317
                      ************************


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)