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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1825#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[TTCTGAGCCCCAAACAAGCCTTTGATGATGAAATGGCTCTTTTTGGTTTTCATTTTACTTTGATTCAACGCTCTTTCCTGCTTCACCAGCTTTGCCCCCCCCCCCCCCCAAAAAAAAACAACAACATTAAAGCACAATGAAATCTTCCGAATTTAACATGAAGGTTTTTACTCCTCCAACATGAAATGAGCTCCTCACGTCTACGTGTCATAACCTGACCTGTGTTTCTAAACCAAACCTTTATTGTTGCTCTCTCCTCACTGGACTACACGATTCAGGAGTGCAGTTTGCATTCAACAAGAGGATCCGTTCTGATTTTGGGATGTTTTCCAACAGCATGTTTGTTTCACTGACATTTTCTGTTTGAATCAAAGAAAAATGAGATTCCACAGCACATAAATTGCCAAATATTTCTTGCGTATGACATTGTAAGCTAACGATGCAAGTAATTAGCAAAGGCTAGCCGGACAAAGTCTCTCTTTTTTTTTTTTTTAAGCCATGTGAGAAGTGTCCCAAAGCGAGGGCTGTGCGGGAGGTCGGCGTGGCCTCCTGCTTTGGTGCTGTGAAATT]
[+] EMBL CA330178 [TTCTGAGCCCCAAACAAGCCTTTGATGATGAAATGGCTCTTTTTGGTTTTCATTTTACTTTGATTCAACGCTCTTTCCTGCTTCACCAGCTTTGCCCCCCCCCCCCCCCAAAAAAAAACAACAACATTAAAGCACAATGAAATCTTCCGAATTTAACATGAAGGTTTTTACTCCTCCAACATGAAATGAGCTCCTCACGTCTACGTGTCATAACCTGACCTGTGTTTCTAAACCAAACCTTTATTGTTGCTCTCTCCTCACTGGACTACACGATTCAGGAGTGCAGTTTGCATTCAACAAGAGGATCCGTTCTGATTTTGGGATGTTTTCCAACAGCATGTTTGTTTCACTGACATTTTCTGTTTGAATCAAAGAAAAATGAGATTCCACAGCACATAAATTGCCAAATATTTCTTGCGTATGACATTGTAAGCTAACGATGCAAGTAATTAGCAAAGGCTAGCCGGACAAAGTCTCTCTTTTTTTTTTTTTTAAGCCATGTGAGAAGTGTCCCAAAGCGAGGGCTGTGCGGGAGGTCGGCGTGGCCTCCTGCTTTGGTGCTGTGAAATT]
consensusID : consensus_1825#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[ATGGCCTTCCTGTTCAACTGGATCGGCTTCTGCCTGTCCTTCTGTCTGACCAACACCATCGCGGGACGCTACGGCGCCATCTGTGGCTTCGGCCTTTCCCTCATCAAATGGATCCTTATCGTCAGGTTTTCCGATTACTTCACCGGCTACTTTAACGGGCAGTACTGGCTCTGGTGGATCTTCCTGTTGCTCGGTCTCCTGCTCTTTTTCAGGGGTTTCATCAACTACCTGAAAGTCCGCAACATGTCGGAGAACATGGCCACCTCTCATCGGACGCGCCTCTTCTTCCTCTACTGAAGAGGTAAAACGCTGAAACATCACCAGCGCCAACAGCGACCTGACCATCTGACCCCCCCCCAGGTCCCCCACACTGTCTCCATTCCTTTCCTGCTCCAGGTTCCTTCCCTCCCCCACTCAAATGACCCGACCAGTGAAGAAGAGGCTGGGAGGGGGNGAGGAAATGATGGAAAGAAGTGGACAGAACGTGGTACCAGTCTTATAAGGCGCCTCTACTTCTGAGCCCCAAACAAGCCTTTGATGATGAAATGGCTCTTTTTGGTTT]
[+] EMBL BU806243 [ATGGCCTTCCTGTTCAACTGGATCGGCTTCTGCCTGTCCTTCTGTCTGACCAACACCATCGCGGGACGCTACGGCGCCATCTGTGGCTTCGGCCTTTCCCTCATCAAATGGATCCTTATCGTCAGGTTTTCCGATTACTTCACCGGCTACTTTAACGGGCAGTACTGGCTCTGGTGGATCTTCCTGTTGCTCGGTCTCCTGCTCTTTTTCAGGGGTTTCATCAACTACCTGAAAGTCCGCAACATGTCGGAGAACATGGCCACCTCTCATCGGACGCGCCTCTTCTTCCTCTACTGAAGAGGTAAAACGCTGAAACATCACCAGCGCCAACAGCGACCTGACCATCTGACCCCCCCCCAGGTCCCCCACACTGTCTCCATTCCTTTCCTGCTCCAGGTTCCTTCCCTCCCCCACTCAAATGACCCGACCAGTGAAGAAGAGGCTGGGAGGGGGNGAGGAAATGATGGAAAGAAGTGGACAGAACGTGGTACCAGTCTTATAAGGCGCCTCTACTTCTGAGCCCCAAACAAGCCTTTGATGATGAAATGGCTCTTTTTGGTTT]
consensusID : consensus_1825#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence
[GCACATTGGGGGCTTCCGAATTTAACATGAAGTTATTTTACCTTCTAGGTTCGGTTTTTACTCCTCCAACATGAAAGGGGCTCCTCACGTCTACGGGTAATAACCTGACCTGTGTTTTTAAACCAAACCTTTTTGGTGGCTCTCTCCTCACTGGCCTACACGATTCAGGGGTGCGGTTTGCTTTCAACAAGAGGATCCGTTC]
[+] EMBL FR0061755 [GCACATTGGGGGCTTCCGAATTTAACATGAAGTTATTTTACCTTCTAGGTTCGGTTTTTACTCCTCCAACATGAAAGGGGCTCCTCACGTCTACGGGTAATAACCTGACCTGTGTTTTTAAACCAAACCTTTTTGGTGGCTCTCTCCTCACTGGCCTACACGATTCAGGGGTGCGGTTTGCTTTCAACAAGAGGATCCGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1825#0 -------------------TTCTGAGCCCCAAACAAGCCTTTGATGATGAAATGGCTCTT 41
consensus_1825#2 ------------------------------------------------------------
consensus_1825#1 ATGGCCTTCCTGTTCAACTGGATCGGCTTCTGCCTGTCCTTCTGTCTGACCAACACCATC 60
consensus_1825#0 TTTGGTTTTCATTTTAC--TTTGATTCAACGCTCTTTCCTGCTTCACCAG---CTTTGCC 96
consensus_1825#2 ------------------------------------------------------------
consensus_1825#1 GCGGGACGCTACGGCGCCATCTGTGGCTTCGGCCTTTCCCTCATCAAATGGATCCTTATC 120
consensus_1825#0 CCCCCCCCCCCCCAAAAAA-AAACAACAACATTAAAGCACAA--TGAAATCTTCCGAATT 153
consensus_1825#2 ----------------GCA-CATTGGGGGCTTCCGAATTTAACATGAAGTTATTTTACCT 43
consensus_1825#1 GTCAGGTTTTCCGATTACTTCACCGGCTACTTTAACGGGCAGTACTGGCTCTGGTGGATC 180
* * * * *
consensus_1825#0 TAACATGAAGGTTTTTACTCCTCCAACATGAAATGAGCTCCTCACGTCTACGTGTCATAA 213
consensus_1825#2 TCTAGGTTCGGTTTTTACTCCTCCAACATGAAAGGGGCTCCTCACGTCTACGGGTAATAA 103
consensus_1825#1 TTCCTGTT--GCTCGGTCTCCTGCTCTTTTTCAGGGGTTTCAT-CAACTACCTG--AAAG 235
* * * ***** * * * * * * * * **** * * *
consensus_1825#0 CCTGACCTGTGTTTCTAAACCAAACC-TTTATTGTTGCTCTCTCCTCACTGGACTACACG 272
consensus_1825#2 CCTGACCTGTGTTTTTAAACCAAACC-TTTTTGGTGGCTCTCTCCTCACTGGCCTACACG 162
consensus_1825#1 TCCGCAACATGTCGGAGAACATGGCCACCTCTCATCGGACGCGCCTCTTCTTCCTCTAC- 294
* * *** *** ** * * * * * * **** ** **
consensus_1825#0 ATTCAGGAGTGCAGTTTGCATTCAACAAGAGGATCCGTTCTGATTTTGGGATGTTTTCCA 332
consensus_1825#2 ATTCAGGGGTGCGGTTTGCTTTCAACAAGAGGATCCGTTC-------------------- 202
consensus_1825#1 -TGAAGAGGTAAAACGCTGAAACATCACCAGCGCCAACAGCGACCTGACCATCTGACCCC 353
* ** ** ** ** ** *
consensus_1825#0 ACAGCATGTTTGTTTCACTGACATTTTCTGTTTGAATCAAAGAAAAATGAGATTCCACAG 392
consensus_1825#2 ------------------------------------------------------------
consensus_1825#1 CCCCCAGGTCCCCCACACTGTCTCCATTCCTTTC--CTGCTCCAGGTTCCTTCCCTCCCC 411
consensus_1825#0 CACATAAATTGCCAAATATTTCTTGCGTATGACATTGTAAGCTAACGATGCAAGTAATTA 452
consensus_1825#2 ------------------------------------------------------------
consensus_1825#1 CACTCAAATGACCCGAC---CAGTGAAGAAGAGGCTGGGAGGGGGNGA-GGAAATGATGG 467
consensus_1825#0 GCAAAGGCTAGCCGGACAAAGTCTCTCTTTTTTTTTTTTTTAAGCCATGTGAGAAGTGTC 512
consensus_1825#2 ------------------------------------------------------------
consensus_1825#1 AAAGAAGTGGACAGAACGTGGTACCAGTCTTATAAGGCGCCTCTACTTCTGAGCCCCAAA 527
consensus_1825#0 CCAAAGCGAGGGCTGTGCGGGAGGTCGGCGTGGCCTCCTGCTTTGGTGCTGTGAAATT 570
consensus_1825#2 ----------------------------------------------------------
consensus_1825#1 C-AAGCCTTTGATGATGAAATGGCTCTTTTTGGTTT---------------------- 562
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |