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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence
[CCCTCCTTTAAGGGNTGNACCTGACGAGGCGTCGCTGGATGAGTATTTCAATGATCTACATGAGGATGATCTGTGGCCCACGGCTCCAGAGAAGTATGATGGACCGGAGGTGGATGACCAGAACGTGCTGAGCACTCCAAAACCATACACGGTGGAGGAAGACCCAGATCCAAATGAGTTCTCCAATTGGAAACTGGCTCTGGTGGGCACCATCCTGCTCATGACTCTGCTGGCCAGTCTGAGCTTGGCCTACTACATGTGTGTCTGGAGGGGAGGCCGCATTTACTACGACCTACAGAAGGATTTTTCTGTGTAAAATAAAGTCACCATTCTGATCTCTGATCTATTTGATCTTTCTGATGGTGGTCACCAACAGAATCCTGTTATTGGCTTTGATCTTTAATGCATCTCTCTGATGCTTCCTAGCAAATGGGGTCCATTTAGTTTATTTAAACTCAAACTGTGGCTTGAAG]
[+] EMBL CA844489 [CCCTCCTTTAAGGGNTGNACCTGACGAGGCGTCGCTGGATGAGTATTTCAATGATCTACATGAGGATGATCTGTGGCCCACGGCTCCAGAGAAGTATGATGGACCGGAGGTGGATGACCAGAACGTGCTGAGCACTCCAAAACCATACACGGTGGAGGAAGACCCAGATCCAAATGAGTTCTCCAATTGGAAACTGGCTCTGGTGGGCACCATCCTGCTCATGACTCTGCTGGCCAGTCTGAGCTTGGCCTACTACATGTGTGTCTGGAGGGGAGGCCGCATTTACTACGACCTACAGAAGGATTTTTCTGTGTAAAATAAAGTCACCATTCTGATCTCTGATCTATTTGATCTTTCTGATGGTGGTCACCAACAGAATCCTGTTATTGGCTTTGATCTTTAATGCATCTCTCTGATGCTTCCTAGCAAATGGGGTCCATTTAGTTTATTTAAACTCAAACTGTGGCTTGAAG]
consensusID : consensus_1831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 394 fasta sequence
[GCAGTCCTCCCTGAGCAGTGGGTTGTACCTGACGAGGCGTCGCTGGATGAGTATTTCAATGATCTACATGAGGATGATCTGTGGCCCACGGCTCCAGAGAAGTATGATGGACCGGAGGTGGATGACCAGAACGTGCTGAGCACTCCAAAACCATACACGGTGGAGGAAGACCCAGATCCAAATGAGTTCTCCAATTGGAAACTGGCTCTGGTGGGCACCATCCTGCTCATGACTCTGCTGGCCAGTCTGAGCTTGGCCTACTACATGTGTGTCTGGAGGGGAGGCCGCATTTACTACGACCTACAGAAGGACATTTCTGTGTAAAATAAAGTCACCATTCTGAAAAAAAAAAAAAAAAAAACCCCAGGGGGGGCCCGGGACCCAATTTTTGGTC]
[+] EMBL CA844529 [GCAGTCCTCCCTGAGCAGTGGGTTGTACCTGACGAGGCGTCGCTGGATGAGTATTTCAATGATCTACATGAGGATGATCTGTGGCCCACGGCTCCAGAGAAGTATGATGGACCGGAGGTGGATGACCAGAACGTGCTGAGCACTCCAAAACCATACACGGTGGAGGAAGACCCAGATCCAAATGAGTTCTCCAATTGGAAACTGGCTCTGGTGGGCACCATCCTGCTCATGACTCTGCTGGCCAGTCTGAGCTTGGCCTACTACATGTGTGTCTGGAGGGGAGGCCGCATTTACTACGACCTACAGAAGGACATTTCTGTGTAAAATAAAGTCACCAT ]
[+] EMBL FR0057121 [ TCCTCCCTGAGCAGTGGGTTGTACCTGACGAGGCGTCGCTGGATGAGTATTTCAATGATCTACATGAGGATGATCTGTGGCCCACGGCTCCAGAGAAGTATGATGGACCGGAGGTGGATGACCAGAACGTGCTGAGCACTCCAAAACCATACACGGTGGAGGAAGACCCAGATCCAAATGAGTTCTCCAATTGGAAACTGGCTCTGGTGGGCACCATCCTGCTCATGACTCTGCTGGCCAGTCTGAGCTTGGCCTACTACATGTGTGTCTGGAGGGGAGGCCGCATTTACTACGACCTACAGAAGGACATTTCTGTGTAAAATAAAGTCACCATTCTGAAAAAAAAAAAAAAAAAAACCCCAGGGGGGGCCCGGGACCCAATTTTTGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1831#0 ----CCCTCCTTTAA----GGGNTGNACCTGACGAGGCGTCGCTGGATGAGTATTTCAAT 52
consensus_1831#1 GCAGTCCTCCCTGAGCAGTGGGTTGTACCTGACGAGGCGTCGCTGGATGAGTATTTCAAT 60
***** * * *** ** **********************************
consensus_1831#0 GATCTACATGAGGATGATCTGTGGCCCACGGCTCCAGAGAAGTATGATGGACCGGAGGTG 112
consensus_1831#1 GATCTACATGAGGATGATCTGTGGCCCACGGCTCCAGAGAAGTATGATGGACCGGAGGTG 120
************************************************************
consensus_1831#0 GATGACCAGAACGTGCTGAGCACTCCAAAACCATACACGGTGGAGGAAGACCCAGATCCA 172
consensus_1831#1 GATGACCAGAACGTGCTGAGCACTCCAAAACCATACACGGTGGAGGAAGACCCAGATCCA 180
************************************************************
consensus_1831#0 AATGAGTTCTCCAATTGGAAACTGGCTCTGGTGGGCACCATCCTGCTCATGACTCTGCTG 232
consensus_1831#1 AATGAGTTCTCCAATTGGAAACTGGCTCTGGTGGGCACCATCCTGCTCATGACTCTGCTG 240
************************************************************
consensus_1831#0 GCCAGTCTGAGCTTGGCCTACTACATGTGTGTCTGGAGGGGAGGCCGCATTTACTACGAC 292
consensus_1831#1 GCCAGTCTGAGCTTGGCCTACTACATGTGTGTCTGGAGGGGAGGCCGCATTTACTACGAC 300
************************************************************
consensus_1831#0 CTACAGAAGGATTTTTCTGTGTAAAATAAAGTCACCATTCTGATCTCTGATCTATTTGAT 352
consensus_1831#1 CTACAGAAGGACATTTCTGTGTAAAATAAAGTCACCATTCTGAAAAAAAAAAAAAAAAAA 360
*********** ****************************** * * *
consensus_1831#0 CTTTCTGATGGTGGTCACCAACAGAATCCTGTTATTGGCTTTGATCTTTAATGCATCTCT 412
consensus_1831#1 ACCCCAGG-GGGGGCC-----CGGGACCCAATTTTTGGTC-------------------- 394
* * ** ** * * * * ** ** ****
consensus_1831#0 CTGATGCTTCCTAGCAAATGGGGTCCATTTAGTTTATTTAAACTCAAACTGTGGCTTGAA 472
consensus_1831#1 ------------------------------------------------------------
consensus_1831#0 G 473
consensus_1831#1 -
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |