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Takifugu rubripes
cluster # 1835 cluster # 1835       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1835#0 length = 532 sequences # 2  
consensus_1835#1 length = 295 sequences # 1  

consensusID : consensus_1835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 532
fasta sequence
                              [GGTAGTTTGCGCGTGTGGCACGGACCGTTTCTAAACATGGCAAAGCTCGTGTGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGTGTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCGAGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGGTCTTTTTTGGGGGGGGGGG-CCATTCCTTATAAGAACAACTTTTATCAGTTTGTAAAGTTCAGTTTATGTCAGTGAACCTGCATAATTCACAACGTTCGGGCCTCAGAACTCTTTGCCCTCTCTGCACCTTTAGGATTTGCTTTTTTCCTGTCGAGGTCAGGGGTCATGGACCTTTCTCCGCTATCACGGACACT]

[+] EMBL CA590492             [GGTAGTTTGCGCGTGTGGCACGGACCGTTTCTAAACATGGCAAAGCTCGTGTGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGTGTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCGAGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGTTCTTTTTTGGGGGGGGGGGTCCATTCCTTATAAGAACAACTTTTATCAGTTTGTAAAGTTCAGTTTATGTCAGTGAACCTGCATAATTCACAACGTTCGGGCCTCAGAACTCTTTGCCCTCTCTGCACCTTTAGGATTTGCTTTTTTCCTGTCGAGGTCAGGGGTCATGGACCTTTCTCCGCTATCACGGACACT]
[+] EMBL FR0060491            [                                       GCAAAGCTCGTGTGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGTGTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCGAGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGGTCTTTTTTGGGGGGGGGGG CCATTCCTTAT                                                                                                                                                                    ]


>consensus_1835#0 GGTAGTTTGCGCGTGTGGCACGGACCGTTTCTAAACATGGCAAAGCTCGTGTGCATCTCA GTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGG GTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAAT GTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGT GTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCG AGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGGTCTTTTTTGGGGGGGGGGGCCA TTCCTTATAAGAACAACTTTTATCAGTTTGTAAAGTTCAGTTTATGTCAGTGAACCTGCA TAATTCACAACGTTCGGGCCTCAGAACTCTTTGCCCTCTCTGCACCTTTAGGATTTGCTT TTTTCCTGTCGAGGTCAGGGGTCATGGACCTTTCTCCGCTATCACGGACACT



consensusID : consensus_1835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence
                              [ACATGGCAAACCTCGTGGGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGCACAGTTATCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGAATATAACGATCCTTGGAAATGGGCGGGCGTTTATCAGCAGTGGCCTGAAATATCCTACGCTTCCATTCTCGGATGTTCCGGGGAAGATCCTCTCCCTCGATCTGCAAGATCCCCCGTTAAAACCAGTGGA]

[+] EMBL FR0062293            [ACATGGCAAACCTCGTGGGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGCACAGTTATCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGAATATAACGATCCTTGGAAATGGGCGGGCGTTTATCAGCAGTGGCCTGAAATATCCTACGCTTCCATTCTCGGATGTTCCGGGGAAGATCCTCTCCCTCGATCTGCAAGATCCCCCGTTAAAACCAGTGGA]


>consensus_1835#1 ACATGGCAAACCTCGTGGGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAG AGAGCACAGTTATCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATC TACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGAATATAACGATCCTTG GAAATGGGCGGGCGTTTATCAGCAGTGGCCTGAAATATCCTACGCTTCCATTCTCGGATG TTCCGGGGAAGATCCTCTCCCTCGATCTGCAAGATCCCCCGTTAAAACCAGTGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1835#0      GGTAGTTTGCGCGTGTGGCACGGACCGTTTCTAAACATGGCAAAGCTCGTGTGCATCTCA 60
consensus_1835#1      ----------------------------------ACATGGCAAACCTCGTGGGCATCTCA 26
                                                        ********** ****** ********

consensus_1835#0      GTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGG 120
consensus_1835#1      GTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGCACAGTTATCTTCAGAAAAAGG 86
                      ************************************** ***** * *************

consensus_1835#0      GTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAAT 180
consensus_1835#1      GTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAAT 146
                      ************************************************************

consensus_1835#0      GTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGT 240
consensus_1835#1      GTGGAGGACGGTGCAGAGAATATAACGATCCTTGGAAATGGGCGGGCGTTTATCAGCAGT 206
                      ****************** ************************* ***************

consensus_1835#0      GTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCG 300
consensus_1835#1      G---GCCTGAAATATCCTACGC----TTCCATTCTCGGATGTTCCGGGGAA---GATCCT 256
                      *   *  **** * *   *         **    *   *  *** ** **     * ** 

consensus_1835#0      AGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGGTCTTTTTTGGGGGGGGGGGCCA 360
consensus_1835#1      CTCCCTCGATCTG-CAAGATCCCCCGTTAAAACCAGTGGA-------------------- 295
                           * **** * **        ****  * *    *                      

consensus_1835#0      TTCCTTATAAGAACAACTTTTATCAGTTTGTAAAGTTCAGTTTATGTCAGTGAACCTGCA 420
consensus_1835#1      ------------------------------------------------------------
                                                                                  

consensus_1835#0      TAATTCACAACGTTCGGGCCTCAGAACTCTTTGCCCTCTCTGCACCTTTAGGATTTGCTT 480
consensus_1835#1      ------------------------------------------------------------
                                                                                  

consensus_1835#0      TTTTCCTGTCGAGGTCAGGGGTCATGGACCTTTCTCCGCTATCACGGACACT 532
consensus_1835#1      ----------------------------------------------------
                                                                          




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)