These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence [GGTAGTTTGCGCGTGTGGCACGGACCGTTTCTAAACATGGCAAAGCTCGTGTGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGTGTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCGAGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGGTCTTTTTTGGGGGGGGGGG-CCATTCCTTATAAGAACAACTTTTATCAGTTTGTAAAGTTCAGTTTATGTCAGTGAACCTGCATAATTCACAACGTTCGGGCCTCAGAACTCTTTGCCCTCTCTGCACCTTTAGGATTTGCTTTTTTCCTGTCGAGGTCAGGGGTCATGGACCTTTCTCCGCTATCACGGACACT] [+] EMBL CA590492 [GGTAGTTTGCGCGTGTGGCACGGACCGTTTCTAAACATGGCAAAGCTCGTGTGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGTGTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCGAGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGTTCTTTTTTGGGGGGGGGGGTCCATTCCTTATAAGAACAACTTTTATCAGTTTGTAAAGTTCAGTTTATGTCAGTGAACCTGCATAATTCACAACGTTCGGGCCTCAGAACTCTTTGCCCTCTCTGCACCTTTAGGATTTGCTTTTTTCCTGTCGAGGTCAGGGGTCATGGACCTTTCTCCGCTATCACGGACACT] [+] EMBL FR0060491 [ GCAAAGCTCGTGTGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGTGTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCGAGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGGTCTTTTTTGGGGGGGGGGG CCATTCCTTAT ] consensusID : consensus_1835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [ACATGGCAAACCTCGTGGGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGCACAGTTATCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGAATATAACGATCCTTGGAAATGGGCGGGCGTTTATCAGCAGTGGCCTGAAATATCCTACGCTTCCATTCTCGGATGTTCCGGGGAAGATCCTCTCCCTCGATCTGCAAGATCCCCCGTTAAAACCAGTGGA] [+] EMBL FR0062293 [ACATGGCAAACCTCGTGGGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGCACAGTTATCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGAATATAACGATCCTTGGAAATGGGCGGGCGTTTATCAGCAGTGGCCTGAAATATCCTACGCTTCCATTCTCGGATGTTCCGGGGAAGATCCTCTCCCTCGATCTGCAAGATCCCCCGTTAAAACCAGTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1835#0 GGTAGTTTGCGCGTGTGGCACGGACCGTTTCTAAACATGGCAAAGCTCGTGTGCATCTCA 60 consensus_1835#1 ----------------------------------ACATGGCAAACCTCGTGGGCATCTCA 26 ********** ****** ******** consensus_1835#0 GTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGG 120 consensus_1835#1 GTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGCACAGTTATCTTCAGAAAAAGG 86 ************************************** ***** * ************* consensus_1835#0 GTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAAT 180 consensus_1835#1 GTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAAT 146 ************************************************************ consensus_1835#0 GTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGT 240 consensus_1835#1 GTGGAGGACGGTGCAGAGAATATAACGATCCTTGGAAATGGGCGGGCGTTTATCAGCAGT 206 ****************** ************************* *************** consensus_1835#0 GTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCG 300 consensus_1835#1 G---GCCTGAAATATCCTACGC----TTCCATTCTCGGATGTTCCGGGGAA---GATCCT 256 * * **** * * * ** * * *** ** ** * ** consensus_1835#0 AGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGGTCTTTTTTGGGGGGGGGGGCCA 360 consensus_1835#1 CTCCCTCGATCTG-CAAGATCCCCCGTTAAAACCAGTGGA-------------------- 295 * **** * ** **** * * * consensus_1835#0 TTCCTTATAAGAACAACTTTTATCAGTTTGTAAAGTTCAGTTTATGTCAGTGAACCTGCA 420 consensus_1835#1 ------------------------------------------------------------ consensus_1835#0 TAATTCACAACGTTCGGGCCTCAGAACTCTTTGCCCTCTCTGCACCTTTAGGATTTGCTT 480 consensus_1835#1 ------------------------------------------------------------ consensus_1835#0 TTTTCCTGTCGAGGTCAGGGGTCATGGACCTTTCTCCGCTATCACGGACACT 532 consensus_1835#1 ---------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |