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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence
[GGTAGTTTGCGCGTGTGGCACGGACCGTTTCTAAACATGGCAAAGCTCGTGTGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGTGTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCGAGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGGTCTTTTTTGGGGGGGGGGG-CCATTCCTTATAAGAACAACTTTTATCAGTTTGTAAAGTTCAGTTTATGTCAGTGAACCTGCATAATTCACAACGTTCGGGCCTCAGAACTCTTTGCCCTCTCTGCACCTTTAGGATTTGCTTTTTTCCTGTCGAGGTCAGGGGTCATGGACCTTTCTCCGCTATCACGGACACT]
[+] EMBL CA590492 [GGTAGTTTGCGCGTGTGGCACGGACCGTTTCTAAACATGGCAAAGCTCGTGTGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGTGTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCGAGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGTTCTTTTTTGGGGGGGGGGGTCCATTCCTTATAAGAACAACTTTTATCAGTTTGTAAAGTTCAGTTTATGTCAGTGAACCTGCATAATTCACAACGTTCGGGCCTCAGAACTCTTTGCCCTCTCTGCACCTTTAGGATTTGCTTTTTTCCTGTCGAGGTCAGGGGTCATGGACCTTTCTCCGCTATCACGGACACT]
[+] EMBL FR0060491 [ GCAAAGCTCGTGTGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGTGTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCGAGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGGTCTTTTTTGGGGGGGGGGG CCATTCCTTAT ]
consensusID : consensus_1835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence
[ACATGGCAAACCTCGTGGGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGCACAGTTATCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGAATATAACGATCCTTGGAAATGGGCGGGCGTTTATCAGCAGTGGCCTGAAATATCCTACGCTTCCATTCTCGGATGTTCCGGGGAAGATCCTCTCCCTCGATCTGCAAGATCCCCCGTTAAAACCAGTGGA]
[+] EMBL FR0062293 [ACATGGCAAACCTCGTGGGCATCTCAGTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGCACAGTTATCTTCAGAAAAAGGGTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAATGTGGAGGACGGTGCAGAGAATATAACGATCCTTGGAAATGGGCGGGCGTTTATCAGCAGTGGCCTGAAATATCCTACGCTTCCATTCTCGGATGTTCCGGGGAAGATCCTCTCCCTCGATCTGCAAGATCCCCCGTTAAAACCAGTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1835#0 GGTAGTTTGCGCGTGTGGCACGGACCGTTTCTAAACATGGCAAAGCTCGTGTGCATCTCA 60
consensus_1835#1 ----------------------------------ACATGGCAAACCTCGTGGGCATCTCA 26
********** ****** ********
consensus_1835#0 GTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGGACAGTGAGCTTCAGAAAAAGG 120
consensus_1835#1 GTTGTAATTGCTGCCTTGGCTGCTTTGCTCGGAGAGAGCACAGTTATCTTCAGAAAAAGG 86
************************************** ***** * *************
consensus_1835#0 GTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAAT 180
consensus_1835#1 GTTCTTGCGTCAAACGAGCTGGTCCAGAACCATCTACCCAACTGTGTCCTGCTGAAGAAT 146
************************************************************
consensus_1835#0 GTGGAGGACGGTGCAGAGGATATAACGATCCTTGGAAATGGGCGTGCGTTTATCAGCAGT 240
consensus_1835#1 GTGGAGGACGGTGCAGAGAATATAACGATCCTTGGAAATGGGCGGGCGTTTATCAGCAGT 206
****************** ************************* ***************
consensus_1835#0 GTAAGTATGAAGTCTGAGAGAAAGTGGCCCGAAATAAAACCTTCAGGTGAGCAGAACCCG 300
consensus_1835#1 G---GCCTGAAATATCCTACGC----TTCCATTCTCGGATGTTCCGGGGAA---GATCCT 256
* * **** * * * ** * * *** ** ** * **
consensus_1835#0 AGTGTTGGATCAGGCATCGCGTGACGTTTTATCTCAGGTCTTTTTTGGGGGGGGGGGCCA 360
consensus_1835#1 CTCCCTCGATCTG-CAAGATCCCCCGTTAAAACCAGTGGA-------------------- 295
* **** * ** **** * * *
consensus_1835#0 TTCCTTATAAGAACAACTTTTATCAGTTTGTAAAGTTCAGTTTATGTCAGTGAACCTGCA 420
consensus_1835#1 ------------------------------------------------------------
consensus_1835#0 TAATTCACAACGTTCGGGCCTCAGAACTCTTTGCCCTCTCTGCACCTTTAGGATTTGCTT 480
consensus_1835#1 ------------------------------------------------------------
consensus_1835#0 TTTTCCTGTCGAGGTCAGGGGTCATGGACCTTTCTCCGCTATCACGGACACT 532
consensus_1835#1 ----------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |