These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 559 fasta sequence [CGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCCGGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTTTAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCTTTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGGTACGGAATGGAACTACAGACCAACTTCTGCGAGTACACTTGGGAACAAAGGAACCCTTGTGCAGAGGCTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTAACTAAAAGTTTCCTATCTCTAAGTATTGTTTCTTAGTTTTGTGGTTAACCTTCCCCATGGAGATGTCTATTAAAAAAATTGTTCATCCAGGTGAGTGACCTGAGCAGTGCTGTTATAACAGGGTAACAAACACATGCTGAACGACACCTGCGTGGGCTGTCGCCGGCCAAATAACATTTGTCCTGAGCTGTCGCTGTGGCTGTATTGTATGAGAAAC] [+] EMBL CA589218 [CGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCCGGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTTTAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCTTTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGGTACGGAATGGAACTACAGACCAACTTCTGCGAGTACACTTGGGAACAAAGGAACCCTTGTGCAGAGGCTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTAACTAAAAGTTTCCTATCTCTAAGTATTGTTTCTTAGTTTTGTGGTTAACCTTCCCCATGGAGATGTCTATTAAAAAAATTGTTCATCCAGGTGAGTGACCTGAGCAGTGCTGTTATAACAGGGTAACAAACACATGCTGAACGACACCTGCGTGGGCTGTCGCCGGCCAAATAACATTTGTCCTGAG ] [+] EMBL BU806180 [ CCTCACACCGCCGACACGACCGCTCAACCCGGGCCCCGGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTTTAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCTTTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGGTACGGAATGGAACTACAGACCAACTTCTGCGAGTACACTTGGGAACAAAGGAACCCTTGTGCAGAGGCTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTAACTAAAAGTTTCCTATCTCTAAGTATTGTTTCTTAGTTTTGTGGTTAACCTTCCCCATGGAGATGTCTATTAAAAAAATTGTTCATCCAGGTGAGTGACCTGAGCAGTGCTGTTATAACAGGGTAACAAACACATGCTGAACGACACCTGCGTGGGCTGTCGCCGGCCAAATAACATTTGTCCTGAGCTGTCGCTGTGGCTGTATTGTATGAGAAAC] consensusID : consensus_1838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [TCCACAGCCGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCCGGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTTTAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCTTTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGATTAGGCTGGATTTCTGACTCCACACCTCTGCAAACATGGCACATCGATCGCAGTCCTCTTCCATCGGCGACAACCCCCTCGACCCCAACTACCTCCCCCCGCATTACCGCGAGGAGTACCGCCTCGCTATCGACGCGTTGATAGAAAATGACACACAGGGCTACTATGAATTCCTCCAGACTGAAGATGTGGTTAGTTTTCTGGCGCAGCCTGAGATTGAGTTGATCAAAAAC] [+] EMBL CA591147 [TCCACAGCCGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCCGGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTTTAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCTTTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGATTAGGCTGGATTTCTGACTCCACACCTCTGCAAACATGGCACATCGATCGCAGTCCTCTTCCATCGGCGACAACCCCCTCGACCCCAACTACCTCCCCCCGCATTACCGCGAGGAGTACCGCCTCGCTATCGACGCGTTGATAGAAAATGACACACAGGGCTACTATGAATTCCTCCAGACTGAAGATGTGGTTAGTTTTCTGGCGCAGCCTGAGATTGAGTTGATCAAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1838#0 --------CGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCC 52 consensus_1838#1 TCCACAGCCGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCC 60 **************************************************** consensus_1838#0 GGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTT 112 consensus_1838#1 GGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTT 120 ************************************************************ consensus_1838#0 TAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCT 172 consensus_1838#1 TAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCT 180 ************************************************************ consensus_1838#0 TTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGGTACGG 232 consensus_1838#1 TTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGAT-TAG 239 ****************************************************** * * consensus_1838#0 AATGGAACTACAGACCAACTTCTGCGAGTACACTTGGGAACAAAGG-AACCCTTGTGCAG 291 consensus_1838#1 GCTGGATTTCTGACTCCACACCTCTGCAAACATGGCACATCGATCGCAGTCCTCTTCCAT 299 **** * * ** ** * *** * * * * * *** * ** consensus_1838#0 AGGCTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTAACTAAAAGT 351 consensus_1838#1 CGGCGACAACCCCCTCGACCCCA---------ACTACCTCCCCCCGCATTACCGCGAGGA 350 *** * * ** * * * * * * * **** * * * consensus_1838#0 TTCCTATCTCTAAGTATTGTTTCTTAGTTTTGTGGTTAACCTTCCCCATGGAGATGTCTA 411 consensus_1838#1 GTACCGCCTC--GCTATCGACGCGTTG----ATAGAAAATGACACACAGGG------CTA 398 * * *** *** * * * * * * ** * ** ** *** consensus_1838#0 TTAAAAAAATTGTTCATCCAGGTGAGTGACCTGAGCAGTGCTGTTATAACAGGGTAACAA 471 consensus_1838#1 CTATGAA-----TTCCTCCAGACTGAAGATGTGGTTAGT-TTTCTGGCGCAGCCTGAGAT 452 ** ** *** ***** ** ** *** * * *** * * * consensus_1838#0 ACACATGCTGAACGACACCTGCGTGGGCTGTCGCCGGCCAAATAACATTTGTCCTGAGCT 531 consensus_1838#1 TGAGTTGATCAAAAAC-------------------------------------------- 468 * ** * ** ** consensus_1838#0 GTCGCTGTGGCTGTATTGTATGAGAAAC 559 consensus_1838#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |