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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 890 fasta sequence
[CCAAACAGAAAGCTAAAGAGCAGTTTCCTTTTCTCATCTAATCTAACTCTCCTCTATGTTGCCCAACATCTGTCTGTGCTTTGGACCGGAGAGCAGTGTTGTTAATTGTAATTAAAGCACACACCTCTATAAATACTGGCTATACCTGCCAGCAGTAAAGCTCGAGAACGTCGTGCGGAGTGCGTACTTTGTTTTTCTTCTATTANTAACTCACTACCACCGTACTCGGGAGCTAGAATATCAGGCTGTTGGACTTTCAGAACTGATGGCAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAGCTCAAACAGGGGAAGAGTGTGAAAATTCCCGTGTACGACTTCACGACTCACGGCAGGCAGAAGGAGTGGAAAACTGTATATGGAGCCAGTGTTATCATCTTTGAGGGAATCATGGCCTTCACAGATAAAAAGCTCCTACAGTTGCTGGATATGAAGATATTTGTGGACACAGACTCCGACATCCGGCTGGTCCGCAGGCTGAGGAGGGATATTACAGA]
[+] EMBL CA589447 [CCAAACAGAAAGCTAAAGAGCAGTTTCCTTTTCTCATCTAATCTAACTCTCCTCTATGTTGCCCAACATCTGTCTGTGCTTTGGACCGGAGAGCAGTGTTGTTAATTGTAATTAAAGCACACACCTCTATAAATACTGGCTATACCTGCCAGCAGTAAAGCTCGAGAACGTCGTGCGGAGTGCGTACTTTGTTTTTCTTCTATTANTAACTCACTACCACCGTACTCGGGAGCTAGAATATCAGGCTGTTGGACTTTCAGAACTGATGGCAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTC ]
[+] EMBL CA332722 [ CAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAGCTCAAACAGGGGAAGAGTGTGAAAATTCCCGTGTACGACTTCACGACTCACGGCAGGCAGAAGGAGTGGAAAACTGTATATGGAGCCAGTGTTATCATCTTTGAGGGAATCATGGCCTTCACAGATAAAAAGCTCCTACAGTTGCTGGATATGAAGATATTTGTGGACACAGACTCCGACATCCGGCTGGTCCGCAGGCTGAGGAGGGATATTACAGA]
consensusID : consensus_1850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[GCAAAGATGGAGAACGAAGAAAAAACTACTACTTTGACCAACAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAG]
[+] EMBL CA590911 [GCAAAGATGGAGAACGAAGAAAAAACTACTACTTTGACCAACAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1850#0 CCAAACAGAAAGCTAAAGAGCAGTTTCCTTTTCTCATCTAATCTAACTCTCCTCTATGTT 60
consensus_1850#1 ------------------------------------------------------------
consensus_1850#0 GCCCAACATCTGTCTGTGCTTTGGACCGGAGAGCAGTGTTGTTAATTGTAATTAAAGCAC 120
consensus_1850#1 ------------------------------------------------------------
consensus_1850#0 ACACCTCTATAAATACTGGCTATACCTGCCAGCAGTAAAGCTCGAGAACGTCGTGCGGAG 180
consensus_1850#1 ------------------------------------------------------------
consensus_1850#0 TGCGTACTTTGTTTTTCTTCTATTANTAACTCACTACCACCGTACTCGGGAGCTAGAATA 240
consensus_1850#1 --------------------------------------GCAAAGATGGAGAAC--GAAGA 20
* * * ** * *** *
consensus_1850#0 TCAGGCTGTTGGACTTTCAGAACTGATGGCAGCAGTGGGGATGGATCTCTGGACCGGCTC 300
consensus_1850#1 AAAAACTACT--ACTTT---GACCAA---CAGCAGTGGGGATGGATCTCTGGACCGGCTC 72
* ** * ***** ** * *******************************
consensus_1850#0 CTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCG 360
consensus_1850#1 CTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCG 132
************************************************************
consensus_1850#0 GAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGG 420
consensus_1850#1 GAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGG 192
************************************************************
consensus_1850#0 TACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGC 480
consensus_1850#1 TACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGC 252
************************************************************
consensus_1850#0 GCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTC 540
consensus_1850#1 GCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTC 312
************************************************************
consensus_1850#0 GTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCT 600
consensus_1850#1 GTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCT 372
************************************************************
consensus_1850#0 GCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGAC 660
consensus_1850#1 GCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGAC 432
************************************************************
consensus_1850#0 ACCCTGCGCAAGCTCAAACAGGGGAAGAGTGTGAAAATTCCCGTGTACGACTTCACGACT 720
consensus_1850#1 ACCCTGCGCAAG------------------------------------------------ 444
************
consensus_1850#0 CACGGCAGGCAGAAGGAGTGGAAAACTGTATATGGAGCCAGTGTTATCATCTTTGAGGGA 780
consensus_1850#1 ------------------------------------------------------------
consensus_1850#0 ATCATGGCCTTCACAGATAAAAAGCTCCTACAGTTGCTGGATATGAAGATATTTGTGGAC 840
consensus_1850#1 ------------------------------------------------------------
consensus_1850#0 ACAGACTCCGACATCCGGCTGGTCCGCAGGCTGAGGAGGGATATTACAGA 890
consensus_1850#1 --------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |