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Takifugu rubripes
cluster # 1857 cluster # 1857       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1857#0 length = 430 sequences # 2  
 consensus_1857#1 length = 283 sequences # 1  
consensusID : consensus_1857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 430
fasta sequence 
                              [GTCTTTTCCATGTTTGAGCAGTCCGAGAGCCAGGAGTTCAAGGAGGCTTTTGGCTGCATTGACCAAGACAGAGACGGACTAATAAAAAAACAGGACTTGAAGGAGACGTACGCACAGCTGGGGAAACTTAACGTCAAAGATGAAGAACTGGACGAGATGCTGAATGAAGGGAAGGGTCCCATTAACTTCACTGTGTTTTTGAGTCTTTTTGGGGAGAAGCTCAACGGCACTGACCCCGAAGACACCATTCTGGCTGCCTTCAAGCTTTTTGACCCGAACGGGACTGGATTTGTTAATAAGGACGAATTTAGGCGATTGCTGATGAACCAGGCAGATAAATTTACAGCAGAAGACGTGGATCAGGGCTTTGCTGTCGCTCCCATCGAACCGACTGGCAACATCGACTACAAGTCCCTCTGCTACATCATCA]

[+] EMBL FR0062291            [GTCTTTTCCATGTTTGAGCAGTCCCAGATCCAGGAGTTCAAGGAGGCTTTTGGCTGCATTGACCAAGACAGAGACGGA TAATAAAAAAACAGGACTTGAAGGAGACGTACGCACAGCTGGGGAAACTTAACGTCAAAGATGAAGAACTGGACGAGATGCTGAATGAAGGGAAGGCTCCCATTAACTTCACTGTGTTTTTGAGTCTTTTTGGGGAGAAGCTCAACGGCACTGACCCCGAAGACACCATTCTGGCTGCCTTCAAGCTTTTTGACCCGAACGGGACTGGATTTGTTAATAAGGACGAATTTAGGCGATTGCTGATGAACCAG                                                                                                    ]
[+] EMBL FR0055279            [                  CAGTCCGAGAGCCACGCTTTCACTGAGGCTTTTGGCTGCATTGACCAACACAGAGACGGACTAATAAAAAAACAGGACTTGAAAGAGACGTACGCACAGCTGGGGAAACTTAACGTCAAAGATGAAGAACTGGACGAGATGCTGAATGAAGGGAAGGGTCCCATTAACTTCACTGTGTTTTTGAGTCTTTTTGGGGAGAAGCTCAACGGCACTGACCCCGAAGACACCATTCTGGCTGCCTTCAAGCTTTTTGACCCGAACGGGACTGGATTTGTTAATAAGGACGAATTTAGGCGATTGCTGATGAACCAGGCAGATAAATTTACAGCAGAAGACGTGGATCAGGGCTTTGCTGTCGCTCCCATCGAACCGACTGGCAACATCGACTACAAGTCCCTCTGCTACATCATCA]




>consensus_1857#0
GTCTTTTCCATGTTTGAGCAGTCCGAGAGCCAGGAGTTCAAGGAGGCTTTTGGCTGCATT
GACCAAGACAGAGACGGACTAATAAAAAAACAGGACTTGAAGGAGACGTACGCACAGCTG
GGGAAACTTAACGTCAAAGATGAAGAACTGGACGAGATGCTGAATGAAGGGAAGGGTCCC
ATTAACTTCACTGTGTTTTTGAGTCTTTTTGGGGAGAAGCTCAACGGCACTGACCCCGAA
GACACCATTCTGGCTGCCTTCAAGCTTTTTGACCCGAACGGGACTGGATTTGTTAATAAG
GACGAATTTAGGCGATTGCTGATGAACCAGGCAGATAAATTTACAGCAGAAGACGTGGAT
CAGGGCTTTGCTGTCGCTCCCATCGAACCGACTGGCAACATCGACTACAAGTCCCTCTGC
TACATCATCA

consensusID : consensus_1857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence 
                              [AGGACAGAAGTCCTGCTCCAATGTCTTTTCCATGTTTGAGCAGTCCCAGATCCAGGAGTTCAAGGAGGCTTTTGGCTGCATTGACCACGACCTGCCGCTGAGTGAGGTGATGACCAAGCGGGAGGATCTAGTTGTTGCACCTGCTGGAGTGACGCTAAAGGAGGCCAATGAAATTCTCCAGAGGAGTAAAAAAGGGAAACTGCCCATCGTGAACGAAGAGGGCTCCCTGGTGTCCATTATTGCTCGCACGGACCTGAAGAAAAACAGAGATTTCCCTCTGGCG]

[+] EMBL FR0062616            [AGGACAGAAGTCCTGCTCCAATGTCTTTTCCATGTTTGAGCAGTCCCAGATCCAGGAGTTCAAGGAGGCTTTTGGCTGCATTGACCACGACCTGCCGCTGAGTGAGGTGATGACCAAGCGGGAGGATCTAGTTGTTGCACCTGCTGGAGTGACGCTAAAGGAGGCCAATGAAATTCTCCAGAGGAGTAAAAAAGGGAAACTGCCCATCGTGAACGAAGAGGGCTCCCTGGTGTCCATTATTGCTCGCACGGACCTGAAGAAAAACAGAGATTTCCCTCTGGCG]




>consensus_1857#1
AGGACAGAAGTCCTGCTCCAATGTCTTTTCCATGTTTGAGCAGTCCCAGATCCAGGAGTT
CAAGGAGGCTTTTGGCTGCATTGACCACGACCTGCCGCTGAGTGAGGTGATGACCAAGCG
GGAGGATCTAGTTGTTGCACCTGCTGGAGTGACGCTAAAGGAGGCCAATGAAATTCTCCA
GAGGAGTAAAAAAGGGAAACTGCCCATCGTGAACGAAGAGGGCTCCCTGGTGTCCATTAT
TGCTCGCACGGACCTGAAGAAAAACAGAGATTTCCCTCTGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1857#0      ----------------------GTCTTTTCCATGTTTGAGCAGTCCGAGAGCCAGGAGTT 38
consensus_1857#1      AGGACAGAAGTCCTGCTCCAATGTCTTTTCCATGTTTGAGCAGTCCCAGATCCAGGAGTT 60
                                            ************************ *** *********

consensus_1857#0      CAAGGAGGCTTTTGGCTGCATTGACCAAGACA-GAGACGGACTAATAAAAAAACAGGACT 97
consensus_1857#1      CAAGGAGGCTTTTGGCTGCATTGACCACGACCTGCCGCTGAGTGAGGTGATGACCAAGCG 120
                      *************************** ***  *   * ** * *    *  **    * 

consensus_1857#0      TGAAGGAGACGTACGCACAGCTGGGGAAACTTAACGTCAAAGATGAAGAACTGGACGAGA 157
consensus_1857#1      GGAGGATCTAGTTGTTGCACCTGCTGGAG--TGACGCTAAAGGAGGCCAATGAAATT--- 175
                       ** *     **     ** ***  * *   * ***  ****  *   **    *     

consensus_1857#0      TGCTGAATGAAGGGAAGGGTCCCATTAACTTCACTGTGTTTTTGAGTCTTTTTGGGGAGA 217
consensus_1857#1      CTCCAGAGGAGTAAAAAAGGGAAACTGCCCATCGTGAACGAAGAGGGCTCCCTGGTGTCC 235
                        *   * **    **  *    * *  *     **         * **   *** *   

consensus_1857#0      AGC-TCAACGGCACTGACCCCGAAGACACCATTCTGGCTGCCTTCAAGCTTTTTGACCCG 276
consensus_1857#1      ATTATTGCTCGCACGGACCTGAAGAAAAACAG--AGATTTCCCTCTGGCG---------- 283
                      *   *     **** ****   *  * * **    *  * ** **  **           

consensus_1857#0      AACGGGACTGGATTTGTTAATAAGGACGAATTTAGGCGATTGCTGATGAACCAGGCAGAT 336
consensus_1857#1      ------------------------------------------------------------
                                                                                  

consensus_1857#0      AAATTTACAGCAGAAGACGTGGATCAGGGCTTTGCTGTCGCTCCCATCGAACCGACTGGC 396
consensus_1857#1      ------------------------------------------------------------
                                                                                  

consensus_1857#0      AACATCGACTACAAGTCCCTCTGCTACATCATCA 430
consensus_1857#1      ----------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)