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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[CTCGAGACTGTTTGTTGTATCTCATACTTTTGGGAAGCCCTTTACCATGTCGCATACCGCCAAGTTCGTCTCCAGCCAGGTCACCGATGCCAAGGACAAGGGAGCCCCAGCTGCCTCCAGCAAGGCCACCAAGACTGGCGAGCCTAGCCTGGGATCCTTCAGAATCCTGCTGTTCGACCAGGAGAACTTCCAGGGCAGGATGGTCGAGGTCCAGAATGAGTGTATGAACGTGTGTGACCATGGCATGGATAGAGTGCGTAGTATCATTGTGGAGAGCGGCCCCTTTGTTGCCTTTGAGCAGACTAACTTCCGTGGNGAGATGTTCATCCTGGAGAAGGGAGAGTATCCTCGCTGGGATACCTGGAGCAACTCCTACCGCAGTGACCGCCTCTTGTCCATCAGGCCCATCCGCATGGACAGCATGGAGCACAAGATCTGCCTGTTTGAGCTCTCTGACTTTAAGGGCAACAAGATGGAGATCCAGGGAGATGATGTGCCCACCCT]
[+] EMBL FR0057789 [CTCGAGACTGTTTGTTGTATCTCATACTTTTGGGAAGCCCTTTACCATGTCGCATACCGCCAAGTTCGTCTCCAGCCAGGTCACCGATGCCAAGGACAAGGGAGCCCCAGCTGCCTCCAGCAAGGCCACCAAGACTGGCGAGCCTAGCCTGGGATCCTTCAGAATCCTGCTGTTCGACCAGGAGAACTTCCAGGGCAGGATGGTCGAGGTCCAGAATGAGTGTATGAACGTGTGTGACCATGGCATGGATAGAGTGCGTAGTATCATTGTGGAGAGCGGCCCCTTTGTTGCCTTTGAGCAGACTAACTTCCGTGGNGAGATGTTCATCCTGGAGAAGGGAGAGTATCCTCGCTGGGATACCTGGAGCAACTCCTACCGCAGTGACCGCCTCTTGTCCATCAGGCCCATCCGCATGGACAGCATGGAGCACAAGATCTGCCTGTTTGAGCTCTCTGACTTTAAGGGCAACAAGATGGAGATCCAGGGAGATGATGTGCCCACCCT]
consensusID : consensus_1862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 501 fasta sequence
[GAGATAAGTCCAAGGCTTCTTCCCAGACTGACGGTAAAACAGCCCAGGGTAAGAGGTCCGAGATGGGAATGTCTTACAAAATGTACGTGTTTGACCAGGAGAACTTCCAGGGTCGCATGGCTGAGATCAACAACGAGTGCATGAATGTATGTGAGCTGGGCATCGACCGCGTTCGCTCCCTGCGCGTCGAGTCTGGACCGTATGTGGGCTTCGAGCAGATGAACCTCTGCGGCGAGATGTACATCCTGGAGAAGGGAGAGTATCCTCGCTGGGACTCCTGGAGCAACAGCCAGAAGAACGACTACCTGCTGTCTTTCAGGCCTGTCAAAATGGACCCTGAGAAGCACAAGATCTGCCTGTACGAGGTTGGGGAGTTCAAGGGCCGCAAAATGGAGATCATGGGCGACGACGTTCCCAGTCCGTTCTCNCACGGNGTCACTGACAGGGTGGGCAGCATTACTGTCAGCTGTGGAACCTGGGTGGGAATACAGTTCCCCGGAT]
[+] EMBL FR0057707 [GAGATAAGTCCAAGGCTTCTTCCCAGACTGACGGTAAAACAGCCCAGGGTAAGAGGTCCGAGATGGGAATGTCTTACAAAATGTACGTGTTTGACCAGGAGAACTTCCAGGGTCGCATGGTTGAGATCAACAACGAGTGCATGAATGTATGTGAGCTGGGCATCGACCGCGTTCGCTCCCTGCGCGTCGAGTCTGGACCGTATGTGGGCTTCGAGCAGATGAACCTCTGCGGCGAGATGTACATCCTGGAGAAGGGAGAGTATCCTCGCTGGGACTCCTGGAGCAACAGCCAGAAGAACGACTACCTGCTGTCTTTCAGGCCTGTCAAAATGGACCCTGACAAGCACAAGATCTGCCTGTACGAGGTTGGGGAGTTCAAGGGCCGCAACATGGAGATCATGGGCGACGACGTTCCCAGTCCGTTCTCCCACGGAGTCACTGACAGGGTGGGCAGC ]
[+] EMBL FR0055319 [ AGATAAGTCCAAGGCTTCTTCCCAGACTGACGGTAAAACAGCCCAGGGTAAGAGGTCCGAGATGGGAATGTCTTACAAAATGTACGTGTTTGACCAGGAGAACTTCCAGGGTCGCATGGCTGAGATCAACAACGAGTGCATGAATGTATGTGAGCTGGGCATCGATCGCGTTCGCTCCCTGCGCGTCGAGTCTGGACCGTATGTGGGCTTCGAGCAGATGAACCTCTGCGGCGAGATGTACATCCTGGAGAAGGGAGAGTATCCTCGCTGGGACTCCTGGAGCAACAGCCAGAAGAACGACTACCTGCTGTCTTTCAGGCCTGTCAAAATGGACCCTGAGAAGCACAAGATCTGCCTGTACGAGGTTGGAGAGTTCAAGGGCCGCAAAATGGAGATCATGGACGACGACGTTCCCAGTCTGTTCTCNCACGGNTTCACTGACAGGGTGGGCAGCATTACTGTCAGCTGTGGAACCTGGGTGGGAATACAGTTCCCCGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1862#0 CTCGAGACTGTTTGTTGTATCTCATACTTTTGGGAAGCCCTTTACCATGTCGCATACCGC 60
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 CAAGTTCGTCTCCAGCCAGGTCACCGATGCCAAGGACAAGGGAGCCCCAGCTGCCTCCAG 120
consensus_1862#1 --------------------------GAGATAAGTCCAAGGCTTCTTCCCAGACTGACGG 34
* *** ***** * * * * *
consensus_1862#0 CAAGGCCACCAAGACTGGCGAGCCTAGCCTGGGA---TCCTTCAGAATCCTGCTGTTCGA 177
consensus_1862#1 TAAAACAGCCCAGGGTAAGAGGTCCGAGATGGGAATGTCTTACAAAATGTACGTGTTTGA 94
** * ** ** * * * ***** ** * ** *** **** **
consensus_1862#0 CCAGGAGAACTTCCAGGGCAGGATGGTCGAGGTCCAGAATGAGTGTATGAACGTGTGTGA 237
consensus_1862#1 CCAGGAGAACTTCCAGGGTCGCATGGCTGAGATCAACAACGAGTGCATGAATGTATGTGA 154
****************** * **** *** ** * ** ***** ***** ** *****
consensus_1862#0 CCATGGCATGGATAGAGTGCGTAGTATCATTGTGGAGAGCGGCCCCTTTGTTGCCTTTGA 297
consensus_1862#1 GCTGGGCATCGACCGCGTTCGCTCCCTGCGCGTCGAGTCTGGACCGTATGTGGGCTTCGA 214
* ***** ** * ** ** * ** *** ** ** * *** * *** **
consensus_1862#0 GCAGACTAACTTCCGTGGNGAGATGTTCATCCTGGAGAAGGGAGAGTATCCTCGCTGGGA 357
consensus_1862#1 GCAGATGAACCTCTGCGGCGAGATGTACATCCTGGAGAAGGGAGAGTATCCTCGCTGGGA 274
***** *** ** * ** ******* *********************************
consensus_1862#0 TACCTGGAGCAACTCCTACCGCAGTGACCGCCTCTTGTCCATCAGGCCCATCCGCATGGA 417
consensus_1862#1 CTCCTGGAGCAACAGCCAGAAGAACGACTACCTGCTGTCTTTCAGGCCTGTCAAAATGGA 334
*********** * * * *** *** **** ******* ** *****
consensus_1862#0 CAGCATGGAGCACAAGATCTGCCTGTTTGAGCTCTCTGACTTTAAGGGCAACAAGATGGA 477
consensus_1862#1 CCCTGAGAAGCACAAGATCTGCCTGTACGAGGTTGGGGAGTTCAAGGGCCGCAAAATGGA 394
* * ****************** *** * ** ** ****** *** *****
consensus_1862#0 GATCCAGGGAGATGATGTGCCCACCCT--------------------------------- 504
consensus_1862#1 GATCATGGGCGACGACGTTCCCAGTCCGTTCTCNCACGGNGTCACTGACAGGGTGGGCAG 454
**** *** ** ** ** **** *
consensus_1862#0 -----------------------------------------------
consensus_1862#1 CATTACTGTCAGCTGTGGAACCTGGGTGGGAATACAGTTCCCCGGAT 501
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |